UFO03468.5prime Sequence
1126 bp (961 high quality bases) assembled on 2009-02-03
> UFO03468.5prime
CAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAAGCAGCAACTTAAGCCG
CGTCAGGACGATCACCGGTCGCCGGTGAAGCGACGCAGTGTGGACATCAA
GTCGGAACCCTTGGACGGCTATCCGGCGCTAGCAGACTACGATTTAAGTA
CGGCCGATATCAAGCCGGATCTCACTGAACTCCAATTGCAGCTGGTGGCG
GAGCAGCAGGCGGCCAGCAACACCATTCGCTTGGAATTGGAACAGCAAGA
GAGTGATTCCGACGAGGATGGCTACTCAGAGCTCGATTACCAAGCTGAAG
ATGTCTTCTGTCAGGACGATATGGATGACTACGATCCAGATTGGTCCAGC
CAGCAGACGGGTTCCCGACTGCTCTTCAAATTTCCCATCCAGCAGAGTGG
CCTGAAATTCGGACAACGCTTCCAGGGACCACAGCACTACTTCAACCAAG
TGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCTGGCCCAAAGCTGCAAC
CTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAAGAAATGGA
AATCTTTATGGCGCTTTCCCTGCTTATGTGTGACCTGAAGCTGGAGCACC
TATCGGATTACTGGAGCACTAACATGTTTTACGGTCTCGTCGGATTCTCT
GGGAAGATTCCTCTGGAACGGTATCAGCAGCTGCTGCACTGCCTTAACTT
TGATGCACCGCAGCTACAAGCGGGCAGAGCCAAAGTGAAGAACTCTCTAC
TGCTAGACTTTATCAACGAGCGTATGGAAGAGATATACATTTGTGGCCAG
CAACTGGTGCTCAATGAACCTATCACTCTGTGGAAAGGTGCATTAAGATA
CCAGGGATGAACTTCCAAACAAATTCCGCCCCTATTCTCACTACTGCTGC
ATATGCTACTGAGCAGAGCGGTTTGGTGGTGAAGATTCTACCGGAGATTG
TGCGGAAGAAGACGCCACCGGCATGGGTACGCAATCCCGGCAGTGTGGAG
CACCGAACAGATTGTCGTGAACTATTGGAGGGTTACAATGGAGACGCACT
GGTACCCTCAGTCTCTGAGCTACGCCTGCTCAGATTGCAGAAGCACATTG
CACTGTCTGCTGCAGATGAATTGCAC
UFO03468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..1282 | 5..1060 | 4860 | 97.8 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..1160 | 5..1060 | 4860 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8804395..8805127 | 1043..315 | 3075 | 96.7 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 315..5 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:21 has no hits.
UFO03468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:23 Download gff for
UFO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 125..1191 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:19 Download gff for
UFO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..1160 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31 Download gff for
UFO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..1160 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:31 Download gff for
UFO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8804375..8805126 | 316..1060 | 97 | <- | Minus |
| 3R | 8805192..8805506 | 1..315 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:19 Download gff for
UFO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4630097..4630848 | 316..1060 | 97 | <- | Minus |
| arm_3R | 4630914..4631228 | 1..315 | 99 | | Minus |
