UFO03469.5prime Sequence
1128 bp (968 high quality bases) assembled on 2009-02-03
> UFO03469.5prime
CAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAATTGCGATC
CTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCCGTGTTGCA
TCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATATTGCCGCAT
ACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAAGACGAACC
GTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGAGGCGCAGT
GTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGCTGGCGGAG
GAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGGCAGCGGGC
GGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGCACTGGACA
GCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATACCACTAGCC
AAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGTCGGGCAAT
CCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACGGATCCCTC
ACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGTGCCCGAGG
AAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGAGCGTTGAC
TTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGACGAGGTGGC
CTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCATGCTTTCGT
CGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATTTCCCCTTC
TACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGATTCCTTTA
CACCGGCGAGTATTTCCACTTCTGGTCTGGCGGTCACCCAGTACATTGCC
CCGCTGATGGCCAATTTCGACACGAGCATGTCCAACGACTCGTTTGTCCG
ACTGCATGACAATGGAACCGCCTTCACCGCCGTGGGGGGAGGATGGTGAC
GCTGCAGGACAGCCGGATTGGCAAGTTTACGTTCAGCCGTGACCTGTACG
AGTGGCGAAATTGTTTCGCATAATGCCTGGGGCCATGAAATCTACTCCAT
CAGAAAAGGAGCTCAGGTCAAGGTCGGC
UFO03469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 63..1190 | 9..1128 | 5055 | 97.4 | Plus |
| l(1)G0289-RB | 2328 | CG2221-RB | 63..1190 | 9..1128 | 5055 | 97.4 | Plus |
| l(1)G0289-RA | 2856 | CG2221-RA | 63..1190 | 9..1128 | 5055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10359296..10360163 | 965..97 | 4235 | 99.4 | Minus |
| X | 23542271 | X | 10366124..10366211 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:48 has no hits.
UFO03469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:23 Download gff for
UFO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 93..1131 | 1..1037 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:32 Download gff for
UFO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 53..1091 | 1..1037 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:33 Download gff for
UFO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 53..1091 | 1..1037 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:33 Download gff for
UFO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10359297..10360163 | 97..964 | 99 | <- | Minus |
| X | 10366124..10366221 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:32 Download gff for
UFO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10253330..10254196 | 97..964 | 99 | <- | Minus |
| arm_X | 10260157..10260254 | 1..96 | 95 | | Minus |
