UFO03471.5prime Sequence
1089 bp (996 high quality bases) assembled on 2009-02-03
> UFO03471.5prime
CAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGCCGGTAAAT
ACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCGCCATTCAA
AACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCCCAAGACGA
GCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGGGCGACACG
GAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAGATCGGCGA
GCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATCGGGCAATG
GCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGATCATGGCC
AGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAACAGATCCT
GCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACATTGTCGGTT
TCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCATGGAGTAT
ATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGTCGAATACC
AGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGGCTTGAGCT
ATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGCCGAGCAAT
ATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTCGGCGTCTC
CGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCACCCGTAGCT
ATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGCAGTCGGAC
ATCTGGTCGTTGGGTCTGTCGCTGGTCGAGATGGCCATCGGCATGTACCT
CATCCCGCCGCCAAACACCGCCACCCTGGAGTCGATATTCGCCGACAATG
CGGAGGAGAGCGGCCAGCCGACGGACGAGCCCAGGGCAATGGTCATCTTC
CGAGCTGCTGGATTATAATTGTAAACGAAACCGCCGCCCAAGCTAGAAGC
ACAAGATCTTCTCCACGAGGTCAAGGACTTCCTGGGACATCTGCCCTGAG
AAACAGCCGACGAGCGGGCAAATCTCCAAGACCCTGCTG
UFO03471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsor1-RA | 1799 | CG15793-RA | 458..1534 | 9..1089 | 5080 | 98.5 | Plus |
| Dsor1-RB | 1503 | CG15793-RB | 171..1238 | 9..1089 | 4935 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9248542..9249181 | 119..758 | 3200 | 100 | Plus |
| X | 23542271 | X | 9249374..9249701 | 758..1089 | 1135 | 94.9 | Plus |
| X | 23542271 | X | 9247799..9247908 | 9..118 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:59 has no hits.
UFO03471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:29 Download gff for
UFO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 3..1081 | 7..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:39 Download gff for
UFO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 451..1534 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:43 Download gff for
UFO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 451..1534 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:43 Download gff for
UFO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9247792..9247908 | 1..118 | 96 | -> | Plus |
| X | 9248542..9249181 | 119..758 | 100 | -> | Plus |
| X | 9249375..9249701 | 759..1089 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:39 Download gff for
UFO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9141825..9141941 | 1..118 | 96 | -> | Plus |
| arm_X | 9142575..9143214 | 119..758 | 100 | -> | Plus |
| arm_X | 9143408..9143734 | 759..1089 | 95 | | Plus |
