UFO03472.5prime Sequence
1085 bp (994 high quality bases) assembled on 2009-02-03
> UFO03472.5prime
CAGTCGACATGGAGGAATCCAATCACGGTTCGGCTGGCTGTGAAAACGTA
TCGCAGTTCATGCTCGATGACCTACAATTGGCAGCAGAGCTGGGAAAAAC
GCTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGAGTACAAGA
TTAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCAAGCACATT
AATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTACGAGCAGCT
GGAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCTAAATCTGG
AGAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCAACACGGAA
GTCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGCGATGCTCG
GCAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCAGCAGGAAC
GCTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTCACAGCATT
CAATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTAGATGTTAT
GGCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAGTAATGCCA
CCATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGGAATTGGTA
AAGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTGGCCGAACA
GCAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAATCCAAGACA
ACCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATGAGGGAACA
ATGTCGATGCACGAGGAGTTCAGCCTCCTGCGACGACGCGAGACAAGGCC
AAATGTGTAGTCGCTGCCTGAGGGATATTAACGAAAGCAACACCAATATG
GATGATCAATCCTCCATTGCCCCAACCGAGAAATCTACGAGATGACGATC
GCAGCATACTAAGCGAAAGCACTCGAAATGCGATATAGTGGTGCGATATA
GTACGCTCGGATTCCGAGGACTCATCCCACTCTAGCGACAACCAATCTTA
TCGGGACCTAGTCGAGAAATATTGAAGCTCTGTTG
UFO03472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2706 | CG1962-RB | 135..1223 | 9..1082 | 4970 | 98.1 | Plus |
| Cen-RA | 2841 | CG1962-RA | 270..1358 | 9..1082 | 4970 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20680503..20681492 | 995..9 | 4690 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:15 has no hits.
UFO03472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:28 Download gff for
UFO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-RB | 117..1218 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:00 Download gff for
UFO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 260..1361 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:42 Download gff for
UFO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 260..1361 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:42 Download gff for
UFO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20680401..20681500 | 1..1085 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:00 Download gff for
UFO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20680401..20681500 | 1..1085 | 97 | | Minus |
