UFO03474.5prime Sequence
1101 bp (988 high quality bases) assembled on 2009-02-03
> UFO03474.5prime
CAGTCGACATGGCCCAATTCGAGAAGGAGATCGTTCAGGCGGTGCTGATC
GCCGACAACAATGTGTGGAACTTCAAGCCCCTCTCCGACGAGGGCTCTAC
GGCCCTGCTGCCGCTGGTCAACGTGCGGATGCTTGACTACGCTCTCATGG
CGCTGAACCGCAGCGGCGTGGAGGAGGTGTTCGTGTACACCAGCCTCTAT
CGCTCGAGCATCCGGGAGCACATCAGGGCCGGCATTGCCACGGACGCAGC
CTGGTCATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGGTTGTCGCT
GCTTCGGCGATGCCATGCGTGATTTGGACAATAAGGCGCTGATCCGTGGC
CACTTCATTCTGCTCGGCGCCGATACGGTGACCAATGCCGATCTGCGCCC
AGTGCTGGAGCAGCACAAGCGGCAGGCCAAGTTCGACAAGGGCACGGCCG
CCACGCTGGTGTTCAAGGAGTGTGCCAACAATGTGCGCACTGGCAACGAG
GTGCTGATCGCCGTGGACCGTCGCAACGACCGGCTGCACTACCACCAGCG
GCTGCGGATGCACCACAAGGAGAATCGCTACCAACTACCACTAGATGTCT
TTCTGGGCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAGATCCGCAG
ATTGCCATTGGCTCGCCCTCAATGCTGTCCCTGTTCAACGACAACTTTGA
CTTTCAGACGCGTGATGACTTCGTCAGGGGTTTGTTGATAAACGAGGAAC
TGCTGGACAGCATGATATATGTGGCACTGCTCCCGGCAGCCCAGTACGCG
CACAAAGTGAACAACTGGGCCGGCCTACCAGCTGGTTAGTCGGGACATTA
TCAACCGGTGGGCCTACCCCTTCGTTCCGGACATAGGCCTTTACTTGCTG
CAGCAGAGTACGTCTTCCACAAGGACACATCTACAGAGCCCCGAGCGCAT
GTCTCGAAAGTGGCTTTGCTCCAAACGTGGTCATCGAAACGGGGCAGTCC
CGTAAACAGTGGCTCATGATATGACAGCCTGATTGGCGCATTGCGGATCG
CAGACTGTCGACTGACCATGCGTTCCTCAGGCGACGTCACGTATGGAAAC
T
UFO03474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-RB | 2447 | CG3806-RB | 52..1148 | 9..1090 | 4910 | 97.5 | Plus |
| eIF2B-epsilon-RA | 2297 | CG3806-RA | 52..1148 | 9..1090 | 4910 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1921677..1922472 | 1016..224 | 3535 | 98.2 | Minus |
| X | 23542271 | X | 1922542..1922668 | 227..101 | 635 | 100 | Minus |
| X | 23542271 | X | 1922730..1922823 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:08 has no hits.
UFO03474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:20 Download gff for
UFO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RB | 34..1149 | 2..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:24 Download gff for
UFO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 57..1172 | 2..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:38 Download gff for
UFO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 47..1162 | 2..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:38 Download gff for
UFO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1921577..1922469 | 227..1101 | 96 | <- | Minus |
| X | 1922543..1922667 | 102..226 | 100 | <- | Minus |
| X | 1922731..1922828 | 2..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:24 Download gff for
UFO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1815610..1816502 | 227..1101 | 96 | <- | Minus |
| arm_X | 1816576..1816700 | 102..226 | 100 | <- | Minus |
| arm_X | 1816764..1816861 | 2..101 | 96 | | Minus |
