UFO03478.5prime Sequence
1096 bp (870 high quality bases) assembled on 2009-02-03
> UFO03478.5prime
CAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAGCCTATGTG
GACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGGTCCTACGG
AGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGTCAAGGAGT
TCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGAAGCAGTTG
TCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATATCCTCGTA
CCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGGATCGCTGC
ACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGGCCCACGCC
ATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTGCATGCCAT
GACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAACCTGCTCT
TGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCACGGTGGCG
GACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCTTGGATGGC
GCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGACATTTTTA
GCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGCCCTTTAAA
GGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAGGGTGAACG
CCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCTGATGACCG
CCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGTACATAGTG
GGCGGTTATGCACGAGATCGTCAAGGACTATACGGGGGCGGACATGGTCC
TGGTAATACACGTTTGTTAATCATCAGATTGTCACCCATATATACGACGG
CACGGGTGGCCGGCTCACCGATAGCTTCATTCGCAGGAGGGGGAACTGAC
CCCTCGTCACACAGTTAACACCGACCACCGGCTGCCAACTGCAATTGTGA
CGCGGATGAGCAAATACCAAAAAAAACGAAATGTCAAATGACCGAAAATA
ACCCCACTCACAACTCATCCGGAAATCACCGCCGAGCGAAATCTGG
UFO03478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..2000 | 9..1050 | 4535 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20522502..20522822 | 696..376 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 378..76 | 1515 | 100 | Minus |
| X | 23542271 | X | 20522264..20522446 | 877..693 | 780 | 97.3 | Minus |
| X | 23542271 | X | 20523899..20523967 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:32 has no hits.
UFO03478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:18 Download gff for
UFO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 953..1927 | 1..975 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:25 Download gff for
UFO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 955..1929 | 1..975 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:38 Download gff for
UFO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 955..1929 | 1..975 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:38 Download gff for
UFO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20522264..20522445 | 694..877 | 97 | <- | Minus |
| X | 20522505..20522820 | 378..693 | 100 | <- | Minus |
| X | 20523059..20523358 | 78..377 | 100 | <- | Minus |
| X | 20523899..20523972 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:25 Download gff for
UFO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20393291..20393472 | 694..877 | 97 | <- | Minus |
| arm_X | 20393532..20393847 | 378..693 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 78..377 | 100 | <- | Minus |
| arm_X | 20394926..20394999 | 1..77 | 94 | | Minus |
