UFO03484.5prime Sequence
1056 bp (966 high quality bases) assembled on 2009-02-03
> UFO03484.5prime
CAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAACAATTGTAC
CCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGATCCCAGCCA
GAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGCAACCACAT
TTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCAACGCCCCC
TCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGACACCTACGG
GAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTGCGTCGTTT
CTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCA
GCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGCGCCCTGTT
CACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAGCTCCGTGG
AGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCGGCCTCGTG
ACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATGGCTCTGCG
CGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGGCGTGGTAG
TGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGGATCTCTGG
CACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGCTACCTGCC
ATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGTTAAAGGAA
ATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCAAGGATGCG
GAGGAGCTTATCGCCCAATACATGTCCGAGATGGACGCAGAGTCTATGCC
ATGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCCTCGTCTCACA
TTGCCCCTGATCATGTCTGCTGCTTCCATGGTGTCAGCAGTTGTCCGGGC
ATTAATGCGATATTTATACTCGTTCATCATCTCCGATATGTCTGACTGTC
ACAGTGATGCTCAATGGTCATTGGGCGCTGATGCCTGAATCTAGCTGCCC
TTTGTA
UFO03484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut1-RA | 2412 | CG8714-RA | 318..1377 | 9..1055 | 4715 | 97.2 | Plus |
| slv-RC | 1247 | CG8717-RC | 1..65 | 73..9 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8085044..8085641 | 365..959 | 2670 | 98.3 | Plus |
| 2R | 25286936 | 2R | 8084690..8084853 | 205..368 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 8084528..8084639 | 99..210 | 545 | 99.1 | Plus |
| 2R | 25286936 | 2R | 8083293..8083385 | 9..101 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:04 has no hits.
UFO03484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:21 Download gff for
UFO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 309..1375 | 1..1055 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:22 Download gff for
UFO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 311..1377 | 1..1055 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:17 Download gff for
UFO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 311..1377 | 1..1055 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:17 Download gff for
UFO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8083286..8083385 | 1..101 | 96 | -> | Plus |
| 2R | 8084531..8084635 | 102..206 | 100 | -> | Plus |
| 2R | 8084692..8084852 | 207..367 | 100 | -> | Plus |
| 2R | 8085047..8085641 | 368..959 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:22 Download gff for
UFO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3970791..3970890 | 1..101 | 96 | -> | Plus |
| arm_2R | 3972036..3972140 | 102..206 | 100 | -> | Plus |
| arm_2R | 3972197..3972357 | 207..367 | 100 | -> | Plus |
| arm_2R | 3972552..3973146 | 368..959 | 98 | == | Plus |
