UFO03487.5prime Sequence
1153 bp (1025 high quality bases) assembled on 2009-02-03
> UFO03487.5prime
CAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAATATTCTTC
TGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCGCACACAGT
ATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAAGCAAAATC
CCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTCAGAGTTTA
CACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCGCACGCCGG
AAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCACAGGAGCT
CATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCAATGAATTT
AGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCTGATGATTT
TGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGAGGCTATTG
CCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACATCGATCTG
AGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGACTCGGGCTA
CGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCATATATCGG
TCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATAATTGGACC
ATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTGCCGCAATA
CGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTTGCCAAGAT
TGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCATCAAAGAC
CCTATACACAAACAAAAATCTCATTGAAAGCAATGGATGTGGTTCTGTTT
GGGCCACCGCGAGAAACTGGTACCCGCTGGAACGACTACATTTGGTAACA
CTGTTGCTAATGCTATTATTGGTTGTTGGTACGCCTATCAGCAAAATAAG
ATGCCAAACGGCATCTGCGTCGAATGGTCATGATATGGAGGGATGCATGA
GGGCTGAGCAAAGTCTACAGGAATGCAGAGACTAGACGGCAGATGAGCAG
AAATTTGCACGAAAACTAGATGGACGTGCTAAAGACGCCACTCAGTCTCG
ACCGATGAGTCACACTGAAAGGATCGATGTGCACGATGCCGCATCACTAT
AAA
UFO03487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-RD | 2141 | CG9126-RD | 193..1219 | 9..1029 | 4865 | 98.7 | Plus |
| Stim-RA | 2255 | CG9126-RA | 193..1219 | 9..1029 | 4865 | 98.7 | Plus |
| Stim-RF | 2319 | CG9126-RF | 600..1283 | 352..1029 | 3150 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15938756..15939100 | 353..9 | 1725 | 100 | Minus |
| X | 23542271 | X | 15936792..15937031 | 755..516 | 1170 | 99.2 | Minus |
| X | 23542271 | X | 15937591..15937754 | 515..352 | 820 | 100 | Minus |
| X | 23542271 | X | 15936319..15936436 | 863..747 | 525 | 98.3 | Minus |
| X | 23542271 | X | 15936086..15936250 | 1022..862 | 505 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:38 has no hits.
UFO03487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:16 Download gff for
UFO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 170..1217 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:05 Download gff for
UFO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..1233 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:00 Download gff for
UFO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..1233 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:00 Download gff for
UFO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15936086..15936248 | 864..1022 | 93 | <- | Minus |
| X | 15936319..15936434 | 749..863 | 98 | <- | Minus |
| X | 15936799..15937031 | 516..748 | 100 | <- | Minus |
| X | 15937591..15937754 | 352..515 | 100 | <- | Minus |
| X | 15938758..15939107 | 1..351 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:05 Download gff for
UFO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15830119..15830281 | 864..1022 | 93 | <- | Minus |
| arm_X | 15830352..15830467 | 749..863 | 98 | <- | Minus |
| arm_X | 15830832..15831064 | 516..748 | 100 | <- | Minus |
| arm_X | 15831624..15831787 | 352..515 | 100 | <- | Minus |
| arm_X | 15832791..15833140 | 1..351 | 98 | | Minus |
