UFO03488.5prime Sequence
1186 bp (962 high quality bases) assembled on 2009-02-03
> UFO03488.5prime
CAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTCCTATGGCG
CTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCCACGGCCGA
TGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGAGCCTGATC
TCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTTTGACGACG
GGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCAGTCGCAGC
AGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCATCATGGGCA
ACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCGGGCTGTAT
AAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAGCCCCACCG
CCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGATCTGGAACT
CGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAAACCTCTAC
AGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCTCTGGCTGT
GGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACTGGCCATCT
CCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGGAAACAATC
GAAGTGACATGGCACGGCAAAGGAAGCGAGGATAAGCGGGGGCAGGATAT
TCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGGCCTGCGGT
GGTTTGCGAGCGTGGCATGAAAGTGGCGGCCATCTGTGCCGCTCTGATAT
TTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAGAGCTTCAACAGC
AGTTGCTGTGGCTACTCTACGATTTGGGCCCCTCAACGCTATCCGATGGC
CTGGCACCTAGCGAGCCGGAGGAGACCATCGCACGCATCCAGCATCAGTG
CGAGCAGTTTATCGCGGGTATAGAGTCGCGAGACCACTATCGGACCATCA
CGTATATCGTTACTACAGGGACTACTACATCGATGCTCAATACCGGACGC
TTGCCGATGCAATGCGGCGACGTTATCGTTGCTACGTACGTGCTGAGAAA
GATCTCAAGGACTATGAATTGCCACAGTCTAACGTACTTAGAACACAGTC
TGTCATGGGGAAATTCTAGATTCTGAGTTTCCATTT
UFO03488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mnn1-RA | 4275 | CG13778-RA | 1039..2142 | 8..1076 | 4630 | 96.6 | Plus |
Mnn1-RB | 1927 | CG13778-RB | 295..1398 | 8..1076 | 4630 | 96.6 | Plus |
Mnn1-RC | 5196 | CG13778-RC | 1039..2142 | 8..1076 | 4630 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7057861..7058327 | 274..740 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057406..7057677 | 8..279 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 7058401..7058559 | 746..901 | 630 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:47 has no hits.
UFO03488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:15 Download gff for
UFO03488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RA | 1005..2046 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:04 Download gff for
UFO03488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1032..2073 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:49 Download gff for
UFO03488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mnn1-RC | 1032..2073 | 1..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:49 Download gff for
UFO03488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
2L | 7057864..7058325 | 277..738 | 100 | -> | Plus |
2L | 7058393..7058696 | 739..1020 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:04 Download gff for
UFO03488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
arm_2L | 7057864..7058325 | 277..738 | 100 | -> | Plus |
arm_2L | 7058393..7058696 | 739..1020 | 91 | | Plus |