UFO03490.5prime Sequence
1132 bp (1005 high quality bases) assembled on 2009-02-03
> UFO03490.5prime
CAGTCGACATGGCCAGCGAGCAAACGATTGATGGAGCAGCCGCAATTCCC
AGCGGCGGCGGCGACGAACCCTTCCTGGGACTGCTGGACGTGGCCCTATT
GGCGGTGCTAATCGGCGGCGCAGCCTTCTACTTCCTGCGTAGCCGCAAGA
AGGAGGAGGAGCCAACCAGGAGCTATTCCATACAACCCACCACAGTGTGC
ACCACCAGTGCGTCGGACAATTCGTTCATCAAGAAGCTCAAGGCATCCGG
ACGCAGTCTGGTCGTCTTCTATGGCTCACAGACCGGAACCGGCGAGGAGT
TCGCCGGCCGTCTGGCCAAGGAGGGCATTCGTTACCGTCTGAAGGGCATG
GTTGCCGATCCCGAGGAATGCGACATGGAGGAGCTGCTGCAGCTGAAGGA
CATCGACAACTCGCTGGCGGTCTTTTGCCTGGCCACCTACGGCGAGGGAG
ATCCCACTGACAACGCCATGGAGTTCTACGAGTGGATCACCAGCGGCGAT
GTCGATCTGAGCGGGCTAAATTATGCGGTCTTTGGCTTGGGCAACAAGAC
CTATGAGCACTACAACAAGGTGGCCATCTATGTGGACAAGCGACTGGAGG
AGCTGGGCGCCAACCGGGTCTTTGAACTGGGACTGGGCGACGATGATGCC
AACATCGAGGATGACTTCATCACGTGGAAGGATCGCTTCTGGCCCGCCGT
GTGCGATCACTTCGGCATCGAGGGCGGCGGCGAGGAAGTGCTCATCCGCC
AGTACCGTTTGCTAGAACAGCCAGATGTGCAGCCTGACCGCATTTACACG
GGAGAGATCGCCCGCCTGCACTCGATTCAGAACAGCGCCCGCCCTTCGAC
GCCAAGAACCCATTCCTGGCCCCATCAAGGTGACCCGCGAGCAGCACAGG
GCGGTGGCCGCTCCTGCATGCACATTGAGCTGAGCATCGAGGGTTCCAAG
ATGCGCTACGATGCCGAGATCATGTGCCATGTTCCTGTTACGACAGAGTC
TGGTGGAGAAGCTCGGCAGCTGGTCACGCGATCTGAACTGTGTTCTTCGC
TGATCACACTGATCGGACAGAGCAGCAGCACCATCCCTTGCCCCATACGT
ACGGACCGCTCTGACCCTTACTGGAAATTACG
UFO03490.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr-RD | 2679 | CG11567-RD | 246..1392 | 8..1132 | 5020 | 97.2 | Plus |
| Cpr-RC | 2581 | CG11567-RC | 148..1294 | 8..1132 | 5020 | 97.2 | Plus |
| Cpr-RA | 2739 | CG11567-RA | 306..1452 | 8..1132 | 5020 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6342727..6343071 | 185..529 | 1725 | 100 | Plus |
| 2L | 23513712 | 2L | 6344344..6344716 | 653..1017 | 1435 | 97.3 | Plus |
| 2L | 23513712 | 2L | 6342173..6342349 | 8..184 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 6344158..6344283 | 527..652 | 630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2305..2335 | 636..666 | 110 | 83.9 | Plus |
UFO03490.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:13 Download gff for
UFO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 360..1387 | 1..1017 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:01 Download gff for
UFO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 296..1323 | 1..1017 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:11 Download gff for
UFO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr-RA | 296..1323 | 1..1017 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:11 Download gff for
UFO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6342163..6342349 | 1..184 | 97 | -> | Plus |
| 2L | 6342727..6343069 | 185..527 | 100 | -> | Plus |
| 2L | 6344159..6344283 | 528..652 | 100 | -> | Plus |
| 2L | 6344344..6344716 | 653..1017 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:01 Download gff for
UFO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6342163..6342349 | 1..184 | 97 | -> | Plus |
| arm_2L | 6342727..6343069 | 185..527 | 100 | -> | Plus |
| arm_2L | 6344159..6344283 | 528..652 | 100 | -> | Plus |
| arm_2L | 6344344..6344716 | 653..1017 | 97 | == | Plus |
