UFO03492.5prime Sequence
1122 bp (992 high quality bases) assembled on 2009-02-03
> UFO03492.5prime
CAGTCGACATGCTGGCGGGTATCAGCGAGAAAAGCTATGCGGCGGAGGCC
CGCTACACGAACTTCTACGCCGGCGGCGACATCGCCTGGAGCCCGAATGG
CCATCATCTTTACTGCCTCAATGGCTCAGCTGTAAACCAGGTGGATGTGC
AGACCTCCCAAATCCTAAATAGCTACGGCTTGTCTTCCCCGTCGGCGGAT
AACAAGAGGCCGGCGGAGCTGGACAATATCGATGTGGAGGAGGATACGAT
TACTTGCTTCGGGCTGTCACAGGAGCATCTGGTTACTGCCCATCGAAGTG
GCCTGCTTAGGCTGTGGCAGCTGGACACTGGGAAGCTGGTGAAGCTGTGG
AAGGCGCAGCACAAGGGACCAGTCATCCGAGTTGAGTTTAGTCCCTGCGG
CAGGCTTATCTGCACCAGCGGCGGTGCAGATGCCACACTGAGGCTGTGGG
ACTACTCGAACAACAGCTGTCTGGGTGCCCTCAAGGATTTCCCTGGTCCC
GCTTGGCTCCTCGTCTTTCATCCCAATGTGCTGCGCAAAGAGATCTACGC
CGGAGGTTCGGATAACACTGTCTATGCCTGGAACTACGAGACGAAGACAC
TTGTGCACAAGATGCGAGGTCACCTGTCGCAAGTCACCGGCTTGAGCTTT
AAGAGCAACGCGTCCGACTGCAATGAAATCGTGACTGTAAGCCGGGACAA
GGTTATGATCGTGTGGCAATTGCAGGAGCAGTTGGAAAGCAAGCAGTTGA
AGGTTCTTCCCTTGTACGATGAGCTTGAGGGAGTCGTGTACGCAGACGAG
GGACAACTGATAATCGTGGCGAGCGGATCGGGCAAGCTGCAACAGGTCGA
CCCTAAATCTTGGAAGATCATGGATATCCCTCTCAACTGATTTCCAAATT
AGTAGACTGCTGCACTGCAGCGAGCTAAACAGCTGGCCCTGTCACTACAG
AGCAGATATTTTGGTCTACGACGTGAAACCCTGGACCCATTAAACACTTG
GTGGGGTACACGACTCGAATCCTAGACTTGTGCTTTCGGGCGAACCTCGA
TCGCTAGCTGTCCGTGGCACTACTGCAGTCACTCAGCTGACGACCCGTAA
CCGAATGAATGCAAGCTGATCT
UFO03492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-RA | 2523 | CG1671-RA | 64..1192 | 8..1121 | 4910 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9848208..9849247 | 33..1065 | 4520 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:20 has no hits.
UFO03492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:23 Download gff for
UFO03492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..1068 | 8..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:06 Download gff for
UFO03492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..1068 | 8..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:33 Download gff for
UFO03492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..1068 | 8..1005 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:33 Download gff for
UFO03492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9848124..9848150 | 8..34 | 100 | -> | Plus |
| 2R | 9848210..9849187 | 35..1005 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:06 Download gff for
UFO03492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5735629..5735655 | 8..34 | 100 | -> | Plus |
| arm_2R | 5735715..5736692 | 35..1005 | 98 | == | Plus |
