UFO03496.5prime Sequence
1051 bp (946 high quality bases) assembled on 2009-02-03
> UFO03496.5prime
CAGTCGACATGGACACCCGCGTGGAACTGGAACTGGAGCCGGTTGGCAAA
CAGGATAGGCTAAAGGATCAGCCGGATGATGAGAATGAACCGCTGGAAAA
CCAGCTGGAGCTGGAGCAAGAGCACAAGAGCCTGCTCACGCCGGTCAAGA
TTCCCCCGGCTCAGACCGCAAGTCCCGACCAGGAGGCCACGCCCAGCACC
CCACCACCCATGAGCCTGCAGCCGGGAACATCTCGGCAGTTGTTCAGGGA
TGCCGCTATGGCGCACGGAGGCCAGGAGACCACATCGTTGCTGCAGCAGG
AACTGAACAACATAGCCGCCACCCAAACGCCGGCCTCGAAACTCAGAAGC
GCAAGCTCCACGCTGGATGCCAGTATATCCCGGAATCCCTCCACCACGGG
CGGGAAGCACGAGAAGAAGCTGGGCCACCGGCGAGTGGCGGAGGGCGGTG
AGGTGACCTACAAGAAGATCCAATCCAAGCAAATCATGGGCTCCATTCAG
CTGGGCATCCAGCATACGGTGGGCAGCCTGGCCAGTAAGCCCAAGCGGGA
TCTGCTAATGAATGACTTCTGGGAAATGGAAACGATTTCGTTTCCGCCAG
ATGGTTCCTCCATAACACCTGCCCATCACTACAACGACTTCCGCTTCAAG
GTCTACGCACCCATCGCCTTTCGCTACTTCCGAGATCTGTTCGGAATCGC
ACCCGATGACTTCCTCATGTCCATGTGTGCGTCTCCCCTGAGGGAGCTTT
CCAATCCGGGTGCCTCTGGTTCCATATTTTACCTGACGACCGACGACGAG
TTCATTATCACGACTGTGCAGAAGATGGAATGCGAGTTCCTGCAAAACTT
TTGCCCGGTTATTACATGAACCTATCGCAAATCCTCGAACGCTGCTGCCT
AAGTTTCTTCGGACTATAATGCTTCCACTACAACCTCGAAGAACCGTAGC
GTTGGTGGCCATGAACACCTGCTTGCTCTCAGACAATAAGAATGCACTGC
AAGTACGAACCTAAAGGATCTTCCCTCGACGGAAGGCCTCCAAGGCAGAG
C
UFO03496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2939 | CG9985-RC | 383..1424 | 9..1051 | 4800 | 97.9 | Plus |
| sktl-RB | 3215 | CG9985-RB | 659..1700 | 9..1051 | 4800 | 97.9 | Plus |
| sktl-RA | 3747 | CG9985-RA | 659..1700 | 9..1051 | 4800 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20829329..20830370 | 1051..9 | 4610 | 97.6 | Minus |
| 2R | 25286936 | 2R | 22875894..22876085 | 518..709 | 315 | 77.6 | Plus |
| 2R | 25286936 | 2R | 22876145..22876248 | 717..820 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:03 has no hits.
UFO03496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:17 Download gff for
UFO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 646..1696 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:49 Download gff for
UFO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 650..1700 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:47 Download gff for
UFO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 650..1700 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:47 Download gff for
UFO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20829329..20830376 | 1..1051 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:49 Download gff for
UFO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16716834..16717881 | 1..1051 | 97 | | Minus |
