UFO03503.5prime Sequence
1067 bp (939 high quality bases) assembled on 2009-02-03
> UFO03503.5prime
CAGTCGACATGTCATGCCGCGCCCCCTTCCAGCCCGACGATCAGTATGAG
CAGCTGCGCCGGCCGAATGTCGGCGGAGCAGGCGGAGTGGCCATGCCGGG
ACTGGATCAGCAGGCGCATCTCTTTGGGGAGTACGCCGGAGCGCAGGCGT
ACGGTCAGGTGGTTGGCAATTTTCCTGTGCAGGCCATGCAACCCCAGGCG
CAGACTCTGTCCGATGCGTCCAATCTGTCGGCCACGGCCACAATTTTCAT
CCCTCGAGGAGCTGCTCCCCCGCAGCAGCAGTCGCGACATCAGCAATACC
AGCAGGCTGGTGGAGCCGGTGGAGGAGCTCCTTATGGCCAACAGCAGCCG
CGCTATGTGAATGGTTTTAAGCATCACCATCAGCAGCACCACCAGCAGCC
GCACTACAACCATCATCACAATCATCAGCAGAAGTTCAACAACGATATGC
AGAAGCTAACGAATTCCGTGCAGAATCGCCTGCACCTGAATAGCCAGCAG
GGCTCAGCCGGCAACTACTATCAGCAGCAGCAGGTACACCAAAACACACA
CCACCACCAACAACACCAGCAGCAGCATCAGCCACACAACCAACACGCCA
AGTTTCAACGGCACTTCCACTTGAATAACTCATTCCAACAAATCGTACAG
CAAACACAGCACAACCAGCCGCAGCAGCCGCACCACCAGCAGCACAACCA
ACAGCAGCAGCAGTATATTCAGAACCAGAATCAACAACCGCAGCCATCCA
CTTCGACTGCGGCGGCCTCCTCGTCGTCCTCGAACTCTTCGCAGCCGGAC
ATGGCCACCATAGCACTGGAGTATCTTGATACAGTCATACATTGCCCTAA
CCAGAATCCGGGCCAATTTGATTCGATTGCATCACCCCTTCCTGATCATT
TTCGATGGCATGGAGAACAACCAATTCGTGCTTCTCCATCGGCATGGAGG
ACTCTTCGAGAAGTCGATCGAACAGCGCACTTCGGTACATGGGCGCTAGC
TTGTACAACCTGCTTGACAATGCTCACTCGAGCCGAACTCGCTGTTTCAC
ACGCCTGCTTCAAGTGC
UFO03503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 2550 | CG8963-RC | 251..1309 | 9..1067 | 4860 | 97.8 | Plus |
| CG8963-RB | 2753 | CG8963-RB | 334..1392 | 9..1067 | 4860 | 97.8 | Plus |
| CG8963-RA | 2522 | CG8963-RA | 223..1281 | 9..1067 | 4860 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17018063..17018908 | 854..9 | 4215 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17017598..17017803 | 1054..851 | 455 | 88 | Minus |
Blast to na_te.dros performed 2014-11-28 20:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2687 | 378..759 | 449 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2829 | 188..744 | 357 | 57.1 | Plus |
| BS | 5142 | BS BS 5142bp | 1981..2103 | 623..742 | 123 | 59.5 | Plus |
UFO03503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:09 Download gff for
UFO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 333..1398 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:03 Download gff for
UFO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 216..1281 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:49 Download gff for
UFO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 216..1281 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:49 Download gff for
UFO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17018063..17018912 | 1..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:03 Download gff for
UFO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12905568..12906417 | 1..854 | 99 | | Minus |
