UFO03504.5prime Sequence
898 bp (113 high quality bases) assembled on 2009-02-03
> UFO03504.5prime
CAATCCACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGGGAATCCTG
CTCCTTGTGGGTGGTCCTGCTAACGGAAAGGTGTACACGGCCTTGGCCGA
TATGGACGAACTTCGGGAGACGGAATGCATACTGATTACCAACTTGGAAG
GCTAGGTTCCCTTGCAGAAAGACAACTTGAACTTTCTCTTTAATTAAATG
GACTACTACCCGAGGGAGCACTCGGATGCCTCCATTGATATAACCGCCTA
TGTATCCCATCCAATGTTGCGTACCTGCTGACTAAGCGGCTAACCACCGA
TTGGCGGCAGGTGGAGAACCTCATGGTGTGCGACGTGGGCACGGATTTCT
TGCAGAACATCACCCAGTATCGCAGTCTCCTGATTTCCCCTCCGACGAGG
GACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGACACCTACCA
ACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGGATTCAATACA
GCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGACAATCGTAC
GTGAACCACGACTACTACCACACGGTGCTCTGGATGAACGAGGCGATGGC
CCGCATGCTGGAGGAGCCGACCAACCACACCCAGAGCTTCACCAAGGCTG
ACATCCTCGAGTACCTGTCCTTCTCCACCTACAAGGAGGGCAACATAGAG
AGCGCGCTGACAATGACCAACGAGCTGCTCCAACTGCTGCCCCCCACGAG
AGAGCCAATGGAAACAAGCGGTTCTACTAGAAAGATATTGCCCGCATCTG
CATTGCGAAAATGAACGGCGACGATGGCACCGATGAAATGCCCAAGTCCT
ATTTGCCCGTGGCCAAGAGTGACCCGCCATCTTTGATATGACAGAACG
UFO03504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaEFB-RA | 2248 | CG31022-RA | 336..1231 | 9..898 | 3505 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30479121..30479427 | 196..501 | 1120 | 93.2 | Plus |
| 3R | 32079331 | 3R | 30479590..30479781 | 499..690 | 930 | 99 | Plus |
| 3R | 32079331 | 3R | 30474044..30474223 | 9..188 | 585 | 88.3 | Plus |
| 3R | 32079331 | 3R | 30483892..30484062 | 689..855 | 565 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:58 has no hits.
UFO03504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:08 Download gff for
UFO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 537..1229 | 212..898 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:53 Download gff for
UFO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 539..1231 | 212..898 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:46 Download gff for
UFO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 539..1231 | 212..898 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:46 Download gff for
UFO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30479137..30479427 | 212..501 | 93 | -> | Plus |
| 3R | 30479593..30479780 | 502..689 | 98 | -> | Plus |
| 3R | 30483893..30484062 | 690..855 | 94 | -> | Plus |
| 3R | 30484120..30484163 | 856..898 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:53 Download gff for
UFO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26304859..26305149 | 212..501 | 93 | -> | Plus |
| arm_3R | 26305315..26305502 | 502..689 | 98 | -> | Plus |
| arm_3R | 26309615..26309784 | 690..855 | 94 | -> | Plus |
| arm_3R | 26309842..26309885 | 856..898 | 97 | | Plus |
