UFO03509.5prime Sequence
846 bp (559 high quality bases) assembled on 2009-02-03
> UFO03509.5prime
CAGTCGACATGGCCGACAAAAAGAATCTCCTCCTGCTTTTCGACCATCCC
ACCGAGCCAGTGTTCATGGACAAGGGCAAGAGGGTGACCGTGTTCGATGT
GCCCGACTCCTTCCTGACCGACCGCTACCGACCCATCAGCAACGAGGTGC
AGAGCCGCGTCGGCGACAAGGTGGAGCAGCGCGTTCCAGTCCGGGAGATC
TCCATTCCCGATCTGCGGATCCCCATGTCCCTGGGCCGGGACGAGCAGTT
CTCGCTGTTCCTGCCCAAGCACCGCAGGATCGCCGGCCGCCTGATCGATA
TATTCATGAACATGCGCTCCGTGGACGACCTGCAGAGCGTGGCGGTGTAC
GCCAGGGATCGGGTCAACCCGGTGCTCTTCAACTACGCCTTGTCGGTGGC
GCTGCTCCATCGTCCGGACACCCAGGGCCTGGATCTGCCATCCTTCTCGC
AGACTTTCCCCGACCGCTTCATCGACTCGCAGGTGATCCGCAAGATGCGG
GAGGAGTCTTTTGTGGTGCAGCCCGGTTCCCGGATGCCCATCACCATTCC
CAGGGACTACACCGCCTCCGATCTGGATCCCGAGCACCGGCTGTGGTACT
TCCGCGAGGATCTGGGCATCAACCTTCCCCCTGAATTGGCTCTGGTCTAC
CCCCTTCGAGGCCTCCGACCGCAGCATATGGCCAAGGATCGTCGTGGCGA
GCTTCTTCTACTAACTTGCACCAGCAGGTGATCGCCCGCTACAATGCTGA
GCGGGTTCAAGCAACAACCTGGCCAGGGTTCTGCCCCTCAACTACCTGAA
GGATTCCATTGTCGAGGCTACTTGCCCAGATGAACTCTGCGGTACC
UFO03509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 90..920 | 9..838 | 3725 | 97.2 | Plus |
| PPO3-RA | 2228 | CG42640-RA | 61..893 | 9..837 | 1335 | 78.3 | Plus |
| PPO1-RA | 2338 | CG42639-RA | 760..828 | 683..753 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9043813..9044620 | 817..9 | 3475 | 97.2 | Minus |
| 2R | 25286936 | 2R | 23064829..23065639 | 9..817 | 1085 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:50 has no hits.
UFO03509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:04 Download gff for
UFO03509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-RA | 81..919 | 1..838 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:38 Download gff for
UFO03509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 82..920 | 1..838 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:06 Download gff for
UFO03509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 82..920 | 1..838 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:06 Download gff for
UFO03509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9043790..9044628 | 1..838 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:38 Download gff for
UFO03509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4931295..4932133 | 1..838 | 96 | | Minus |
