UFO03517.5prime Sequence
1102 bp (-80 high quality bases) assembled on 2009-02-03
> UFO03517.5prime
ATATACCCACATTATACGAAGTTATCAGTCGACATGGCTCTTTCGACGGC
AACGGCGCCGCTCTACGCCGGCTACAAACCCCTGATCAGCTCGGTAACCA
CGGATACGGATCCGGATCCGGATATGGCCCCCTCCCTGTCAGCAGAAGGA
ACAGCTGATCAGCCCCAAAAATCACAGAGAGAAGGCGAAGTGAAAGGAGC
ATCATCAGAAGCCCAACGAACAAAAGCAAACCCAAACCAGATACTTTCAG
CCAGCAACAGCAGCTCAATCGACGAGCAAGACGAGGATCAAGTAGGAACA
TTGCCATTGCCCCTGCTGTCCATCAATAGAAGGACACCCACCCTGCTCCC
CCGCCCCGTTCCACCATCATCGACCCGATTCACATCGTCCTACAACGACG
ACCTGTGCACGTGCAGCAACTGCGCGTACTCCAGTTTCTCATCCTCCTCC
TCCTCCGCCTCGTCCACATCCTCGTCATCCACGAGCGCTACAGCAGCAGG
AACAGCATTAGCATCAGCAGCCGCATCCGCCGTTGCCAAGAAGCTAGCAC
GCTCCGTGACCGCCACCAGCATCATGGACATGCCGTACAACACCTCGCCG
TCGCTACGCGTGCGCACCACCTCGCTGAATCAGCTGAAGAAGACCGCCGA
CCTGGCCATCGAGAATGAGCTGCACGTCTGTCCGTCGGTGATGTCCGAGG
AGCTGCGCAAGCTGCTGCCGCCCACCTCGGAGACCGTGATGACCAAAACC
CTTCCCCATCCGGGGCGAACGGACCATTGCCGACTGTACCACGCCGCATG
TGATCGCCATGGTTGGCCTGCCGGCGCGCGGCAGACCCTTTATCTCCAGA
AGCTAGCGCGCTACCCTCAACTGGGATCGGATCTCCAACGCGTGTTTTCT
GTCTGGGCGAGTACAGGCGTCATGCAACCACAGCATACATGTCGCACGTG
TTCTTCCGCAGCCGACAACGATGAAGGGCATGGCCATCCGCACCGGGTGC
GGCATCAGGCCCTGCCCGACTCTGGCGATTTGGCTGCTTGACGGGCACGG
GAAGCATCCCCGGTGTTTCCATGCCTACCCACTCCTACTCGCGACGGTGC
CC
UFO03517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfrx-RB | 3376 | CG3400-RB | 403..1455 | 34..1095 | 4545 | 96.3 | Plus |
| Pfrx-RG | 2928 | CG3400-RG | 403..1455 | 34..1095 | 4545 | 96.3 | Plus |
| Pfrx-RN | 3373 | CG3400-RN | 403..1452 | 34..1095 | 4490 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19506483..19507370 | 140..1030 | 3785 | 96.8 | Plus |
| X | 23542271 | X | 19498775..19498880 | 34..139 | 500 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3220..3254 | 160..126 | 121 | 82.9 | Minus |
UFO03517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:59 Download gff for
UFO03517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RB | 403..1381 | 34..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:32 Download gff for
UFO03517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 403..1381 | 34..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:24 Download gff for
UFO03517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 403..1381 | 34..1015 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:24 Download gff for
UFO03517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19498784..19498880 | 43..139 | 100 | -> | Plus |
| X | 19506483..19507355 | 140..1015 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:32 Download gff for
UFO03517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19392817..19392913 | 43..139 | 100 | -> | Plus |
| arm_X | 19400516..19401388 | 140..1015 | 97 | | Plus |
