UFO03518.5prime Sequence
688 bp (-76 high quality bases) assembled on 2009-02-03
> UFO03518.5prime
CCTTTCGTATCCCATACATTATACGAATTTATCAGTCGACATGAAGATCG
CCATCGCATTGCTGGCCTGCCTGGGCCTGGCCGCCGCTGCCAGCTTCCTC
CAGACCCACGAAGTCAAGATCGCCGACAAGGCCTTCCTGATGAAGCAGAA
GTTCCTCTTCGAGATCGTCTACCGCGTGGAGGATCCGCTGATGTTCGAGG
ACCACATCAAGCAGGGCGAGAAATTCTACTTTGAGGAGTCCTACTACACT
CACTACGACATGTACATGAAAAATTTCTTCGAGGCCTACAAGGCTCACGC
CCTGCTGCCCAAGGGCGAGTTCTTCGGCGCCCTGGTCATGTCCCACGCCA
AGCAGGCCCGCGGTCTGTTCAACTTCTTCTACTACGCCAAGGACTGGGAG
ACCTTCGCCGCCAACGTGGCCTGGGCCCGCATGCACGTGAATGAGGGCAT
GTTCGTCTACGCCCTGACCATGGCCGTGATCCACCGCAACGACTTCCATG
GACTGATGCTGCCCTCGATCTACGAGATCTTCCCACAGTTCTTCTTCAAC
AGCAAGTTTGTGTTCGAAGCGGAGAATTTCGACTACGAGATGTGGATGAA
GATGACGATGTCGAGAAGGAGTACATGGATGTGTACTACTAGACCAACAG
ATACGACTACTCAACATGTACCGGTCCAGCGACTACAT
UFO03518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp1beta-RB | 2749 | CG4178-RB | 223..881 | 31..687 | 3125 | 98.5 | Plus |
| Lsp1beta-RA | 2605 | CG4178-RA | 79..737 | 31..687 | 3125 | 98.5 | Plus |
| Lsp1alpha-RA | 2625 | CG2559-RA | 93..696 | 41..643 | 1390 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 899010..899448 | 251..687 | 2020 | 98.4 | Plus |
| 2L | 23513712 | 2L | 898722..898941 | 31..250 | 1055 | 98.6 | Plus |
| X | 23542271 | X | 12490660..12491053 | 251..643 | 975 | 83.8 | Plus |
| 3L | 28110227 | 3L | 66835..67167 | 299..630 | 700 | 81.4 | Plus |
| X | 23542271 | X | 12490383..12490540 | 41..198 | 430 | 84.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:50 has no hits.
UFO03518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:58 Download gff for
UFO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 76..734 | 31..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:11 Download gff for
UFO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 79..737 | 31..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:01 Download gff for
UFO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 79..737 | 31..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:01 Download gff for
UFO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 898718..898941 | 27..250 | 97 | -> | Plus |
| 2L | 899010..899448 | 251..688 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:11 Download gff for
UFO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 898718..898941 | 27..250 | 97 | -> | Plus |
| arm_2L | 899010..899448 | 251..688 | 98 | | Plus |
