UFO03519.5prime Sequence
817 bp (433 high quality bases) assembled on 2009-02-03
> UFO03519.5prime
CAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGATACGAGAG
TTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATCTCATACAGAT
CGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCATCGGGGAT
CACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATGTGACATTG
CGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGAGTCCATCG
ACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGGCTTCTACG
TTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGAACGTGACC
GATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAACAATTGGC
CTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCGGGACATAA
AGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCATCAAGCTC
TGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAGCGACGCAA
CGAGTGGTTGCCCTACAATCCGCCAGAAGTATTAGAAATTAAGCCCGAGG
GCAGTTACAAAGCCGATCCCATCCACCATGTTTGGCAGTTTGGCATTGTG
ATTTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGCTGCCTCCAA
TGATCCGCGCAATGTGCGCTATTCTGGCCTGTCAGGGCGGACTTTAGATG
ATGCCGCTGCGCGAACTCCAGAATTTTCAGCTGCTCACTCCAAGCACACG
GATGTTCAAGCTCTTCT
UFO03519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4945-RD | 1993 | CG4945-RD | 324..1137 | 9..817 | 3660 | 97.3 | Plus |
| CG4945-RA | 2146 | CG4945-RA | 423..1236 | 9..817 | 3660 | 97.3 | Plus |
| CG4945-RC | 2622 | CG4945-RC | 572..1385 | 9..817 | 3660 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16567783..16568047 | 64..328 | 1310 | 99.6 | Plus |
| 2R | 25286936 | 2R | 16568310..16568492 | 428..610 | 900 | 99.5 | Plus |
| 2R | 25286936 | 2R | 16568107..16568208 | 326..427 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 16568558..16568707 | 611..761 | 505 | 93.4 | Plus |
| 2R | 25286936 | 2R | 16566936..16566992 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:41 has no hits.
UFO03519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:57 Download gff for
UFO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RA | 391..1212 | 1..817 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:31 Download gff for
UFO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1385 | 1..817 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:01 Download gff for
UFO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1385 | 1..817 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:01 Download gff for
UFO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16566928..16566992 | 1..65 | 95 | -> | Plus |
| 2R | 16567785..16568046 | 66..327 | 99 | -> | Plus |
| 2R | 16568109..16568208 | 328..427 | 100 | -> | Plus |
| 2R | 16568310..16568492 | 428..610 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:31 Download gff for
UFO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12454433..12454497 | 1..65 | 95 | -> | Plus |
| arm_2R | 12455290..12455551 | 66..327 | 99 | -> | Plus |
| arm_2R | 12455614..12455713 | 328..427 | 100 | -> | Plus |
| arm_2R | 12455815..12455997 | 428..610 | 99 | -> | Plus |
