UFO03522.5prime Sequence
1068 bp (936 high quality bases) assembled on 2009-02-03
> UFO03522.5prime
CAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAGTCTCCGGT
GGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGCGCTGATGG
TGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGGTGGAGGTG
CTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTGCTGCGGAC
CTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCAGCCATTAA
TAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAAAGGACTTA
ATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCGAAACGGAA
GAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGTGTGCTCAA
TAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACATAGTGCTAC
TGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCTGTGCCAGC
AGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAACGAGTGCAG
CAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGCGGTGTTTC
CGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCACGCTGCAG
ACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATACGCGACCT
GATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAAGGCGGCCA
CCAGCGGTTATCTTGTGTCCCTGGCTGCCATATACGCTCTCCTTCACGCC
CACCCCACACGATCTTCACCGCAAACACTCCAGCGGTTTCTCAAATGAAC
CCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGACATGCACCCGGCCA
TACTTGATCCTGTTGTTGCAGCAAAACCAATCTGGGTTGTCCCACCGAGT
ACAATTTGTTTGACATCTTGCAGAACGTGGCTTGCTGCCTCGTCCGGACA
GATGGAAGGCCACTGCCAATGGGCGGTTACATTATGGACCAAACCAGATT
GGTCCACAGTAACCTCTC
UFO03522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 367..1382 | 9..1032 | 4515 | 96.9 | Plus |
| Tango10-RA | 3008 | CG1841-RA | 179..1194 | 9..1032 | 4515 | 96.9 | Plus |
| Tango10-RB | 3247 | CG1841-RB | 418..1433 | 9..1032 | 4515 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721198..11721793 | 374..974 | 2440 | 95.7 | Plus |
| X | 23542271 | X | 11720662..11721027 | 9..374 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:01 has no hits.
UFO03522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:03 Download gff for
UFO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RA | 177..1194 | 5..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:48 Download gff for
UFO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1433 | 5..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:48 Download gff for
UFO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1433 | 5..1032 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:48 Download gff for
UFO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11720660..11721027 | 5..374 | 99 | -> | Plus |
| X | 11721199..11721848 | 375..1032 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:48 Download gff for
UFO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11614693..11615060 | 5..374 | 99 | -> | Plus |
| arm_X | 11615232..11615881 | 375..1032 | 95 | | Plus |
