UFO03524.5prime Sequence
1079 bp (-103 high quality bases) assembled on 2009-02-03
> UFO03524.5prime
CAGTCATCTTAACTAGCGGTACGGTAGCAACGGCGGTGGAGGTGCAGCTG
CCGCTCAAGGTCGTTCCCCTTCAAATCGAGCGCGTTGGCTTCGCTTACTT
TGCGCAACGGCGCCAATTTCTAGCTCCCGGCGGCGTGGAGCGCAGCGAAA
GCGATGAGAAATTGGAGGGCGTGGGCGAGGAGGTGGACATCAGCTACCTA
AAGTCGCTGGATCCTAAGGAGTGGAAGGACCAGGATCATTACGCCGTTCT
TGGCTTGGGCAAGCTCCGATACGAGGCCAGCGAGGATGATGTTCGACGGG
CTTACAGGCGCATGGTTCTGCTGCACCATCCCGATAAGCGGAAAGCCAAG
GGCGAGGAAGTCATCCAGGACGATGATTACTTCACATGCATAACCAAAGC
TTACGAGATACTGGGCACATCCAAGCCGCGCCGCAGCTTTGACTCAGTGG
ATCCCGAGTTTGACGACTCGCTGCCCTCACAGAACGACATCGATAACGAC
TACTTTGGCGTATTTAACAAATTTTTCACACTTAACGGGCGCTGGAGCGA
AAAGCCGCATGTTCCCTCCTTCGGGCAGGTGGACGCCAAACGCGAAGAGG
TGGAGCGCTTCTACAACTTCTGGTACGATTTTAAGTCATGGCGGGAATTC
AGCTACTTGGACGAAGAGGACAAGGAGAAGGGCCAGGACCGCGACGAACG
TCGCTGGATCGAAAAGGAGAACAGGGCGGCTCGAATCAAGCGCAAGAAGG
AGGAAAATGTCTCGTATCCGGTCGCTCGTCGATCTAGCCTACAACAATGA
TAAGCGCATTCAGCGCTTCAAGCAGGAGGAAAAGGATCGCACGGCTGCCT
GCCAAGCGAGCCAAGATGGACGCCGCCCAGGCCCAGAAGGCCGAGCTGAT
CGTGCCATCCGTGAAGCGGCTTTGGCCAGGAGACGCTGAAATGCCGAGCA
AAACGGCATCGAGCAGATCCGCATCGAACGCAAGCAGCAGAAAAAGCTGC
TTAGATGGAACGCAAAACGCTGCGCGACAGGTCAGACTGCAAGTATTATT
GCCAAGAACGACAAGGATACGCTGGAACC
UFO03524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10565-RB | 2538 | CG10565-RB | 483..1541 | 15..1068 | 4835 | 97.7 | Plus |
| CG10565-RA | 2237 | CG10565-RA | 182..1240 | 15..1068 | 4835 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21134247..21134906 | 1068..414 | 2635 | 96.7 | Minus |
| 3L | 28110227 | 3L | 21135618..21135871 | 268..15 | 1225 | 98.8 | Minus |
| 3L | 28110227 | 3L | 21135363..21135510 | 415..268 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:06 has no hits.
UFO03524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:02 Download gff for
UFO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 168..1239 | 12..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:44 Download gff for
UFO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 179..1250 | 12..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:56 Download gff for
UFO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 179..1250 | 12..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:56 Download gff for
UFO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21134237..21134905 | 415..1079 | 96 | <- | Minus |
| 3L | 21135364..21135509 | 269..414 | 100 | <- | Minus |
| 3L | 21135618..21135874 | 12..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:44 Download gff for
UFO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21127337..21128005 | 415..1079 | 96 | <- | Minus |
| arm_3L | 21128464..21128609 | 269..414 | 100 | <- | Minus |
| arm_3L | 21128718..21128974 | 12..268 | 98 | | Minus |
