UFO03526.5prime Sequence
1138 bp (1037 high quality bases) assembled on 2009-02-03
> UFO03526.5prime
CAGTCGACATGCCCACCTTAATAGCGCTGGATGCATCGCTATCGATGCTG
CGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTCGCTGGCCACCAA
GGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCGGCAAATTGGAGC
ACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTGAAGGTGGACTTC
ACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAAGGTGGAGCCCGT
GGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGGTGTCCATAATGT
CGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTCTTTACGGACTGC
GGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCTGGAGGCCTACGC
CGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGACTCTGGCCAACT
ACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGATTACTACTTCACC
AGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGTCTCACTGAAGGG
CCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATGCAGTCGAGGGAA
ATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAACTGGGCCGCACT
ACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAGCTACAAGAGTTC
GGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGGAGGCATCTGTTC
TGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCCCACATATTCGGC
CGAGAACCCACCATTCGCCACACAGACCAGAAGATTGAGGTGTGTGGCTT
CCTGTCCCTTTCGGACATTGGATCACCGGGCCACCCTGAGTCGACACTGG
GTGCTGCCCAAAGTGAGCGGGAGAGAGCGGCAGCAGTCGGAGGTCTGGAA
ACCTGAGCGCAGCAGCCAGCCACCGAGCTCATCTAGATACCAGCATCCCA
CTACGAGCTGGAGAAGCTGGAGCCGAAATCAAGAGTTTACGCCAGGATCA
AGACCCGGAGGAAAGTGGCGAGCACGATGTGACATGTCTGGATCGGCCCG
ACGGCACACGACTGGGCGTCTCCTTCGACCTTATGAAC
UFO03526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 94..1185 | 5..1083 | 5025 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1164536..1165081 | 5..550 | 2715 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1165138..1165616 | 549..1021 | 2005 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:54 has no hits.
UFO03526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:54 Download gff for
UFO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 61..1169 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for
UFO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 88..1196 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:43 Download gff for
UFO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 88..1196 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:43 Download gff for
UFO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1164530..1165080 | 1..549 | 99 | -> | Plus |
| 2L | 1165139..1165673 | 550..1071 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for
UFO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1164530..1165080 | 1..549 | 99 | -> | Plus |
| arm_2L | 1165139..1165673 | 550..1071 | 96 | == | Plus |
