UFO03529.5prime Sequence
1155 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03529.5prime
CAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGCGGATCTTC
ATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGTGACCAGCA
CATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCCCAAGGACT
GGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGCTCAGCCGA
ACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGCCTTCTGCA
CTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGATTTGAGGT
ACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGGCGGTGGTT
AATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTGTCCCTGTG
CAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCAGGTGCCGC
ATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTTACCTGCAG
CCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCGTTTCATGG
AGAAGGCGGAAGCACGGGCAGTCTGGACAAGCCCTCTGCACCGGGATCCT
TCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCTCGCCAGTG
CGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAGCTTGGCTA
TGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCAGGAGAATT
TGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTCTTCAGCTG
CGCCCCAAGTCGCTGGTGGAGAAGCTCGTCTGAATGTGGGCTGGCTAGAT
TCCTCGCTGTCCATCATGACAACAGGGCATACGCGAGTACGACACGCTGT
GCCTGCGCTTCAAGTATTTCACTTTTTTCGATCTAAATCCCAAGTGCGCA
CCAGGTGCGCATCAATCAGCTGTACGAGCAGCCAAGGTGGAAGTTGTTCT
GAACGAAGGAGTTGGATTGCAACAAAGGAAGAAAACCTATGTTTGCCGCC
CTTCAAGTCCAGTGAAACACTCACGTAGAATCAAACACCCCAAGGGGTCG
ACGAGTGATCTCGGGCATTACACTCTCATCTCGAGAAAATGACAACGAAA
AACAG
UFO03529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..1434 | 8..1119 | 4975 | 97.2 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1135 | 9..534 | 620 | 75.4 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..1219 | 9..534 | 620 | 75.4 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 1393..1574 | 804..985 | 340 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17025724 | 8..1079 | 4750 | 97.7 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 9..451 | 610 | 75.8 | Plus |
| 3L | 28110227 | 3L | 4105040..4105215 | 804..980 | 260 | 80.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:56 has no hits.
UFO03529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:52 Download gff for
UFO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 322..1368 | 1..1052 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:45 Download gff for
UFO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1370 | 1..1052 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:07 Download gff for
UFO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1370 | 1..1052 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:07 Download gff for
UFO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024651..17025697 | 1..1052 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:45 Download gff for
UFO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017751..17018797 | 1..1052 | 98 | == | Plus |
