Clone UFO03530 Report

Search the DGRC for UFO03530

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:35
Well:30
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptEloA-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03530.5prime Sequence

1164 bp (993 high quality bases) assembled on 2009-02-03

> UFO03530.5prime
CAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTACGCCTACA
GCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGCGACGAGGA
TCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGAGGACTTGA
ACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGCATGAGCGT
AGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCGGATAAGAA
GCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAAAGATCGGG
AGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAAATGGCGAG
CACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAGAGCAGCAA
ATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGAAAAGGACA
AAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGAGCAAACAC
AAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCCCCACGCCA
CGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATCGAAATCTG
AGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAAATTTTGAC
GATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAGAGCAGCAG
CAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCCTTCCTCGT
CAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGGCACTCTCA
ACTAGCAGTCGACCGACCTCCAAAAACCCGAAACTGTTGGCATCCACAGC
TAAGCTGGAGCCCTTGGATCCAACATTGCACTAGAACTTCCCACCATATC
CAATAACTACAAGCCCATGCCATTAAATCAGACAGTTATGGACGTCGTCG
CTACCAGGGTGGCTCCACCCAAGCCGCAAGCATCACGATACTTTAATGAG
TCAGGAGCCTCTAGCGGCAGGCCATCTCCTTCCAAACCTATGCGCACCAG
GATCTTATTCCGGGTGGGAGAACCTGTCCAAATCCTGCAGGTCCCTTTCC
CTTTTGAATCTCCTGCACCCCGCGTGCGTGCCAAAAAAATTGGATGCATG
GAATTACCGGGTGG

UFO03530.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 374..1505 9..1149 5075 97.2 Plus
EloA-RA 2869 CG6755-RA 546..1677 9..1149 5075 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23252399..23252837 9..447 2195 100 Plus
3R 32079331 3R 23252890..23253269 445..824 1900 100 Plus
3R 32079331 3R 23253332..23253509 832..1008 670 95.5 Plus
Blast to na_te.dros performed 2014-11-28 20:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2386..2520 669..802 168 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6850 665..808 161 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2448 677..772 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6970 669..826 158 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2554 660..926 157 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6866 669..809 141 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2911 677..794 139 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..7006 669..912 139 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6878 669..766 136 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2712 679..813 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6798 669..714 122 73.9 Plus

UFO03530.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:51 Download gff for UFO03530.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 387..1514 1..1140 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:38 Download gff for UFO03530.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 540..1667 1..1140 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:43 Download gff for UFO03530.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 540..1667 1..1140 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:43 Download gff for UFO03530.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23252892..23253269 447..824 100 -> Plus
3R 23253325..23253542 825..1044 93 -> Plus
3R 23252393..23252836 1..446 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:38 Download gff for UFO03530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078115..19078558 1..446 99 -> Plus
arm_3R 19078614..19078991 447..824 100 -> Plus
arm_3R 19079047..19079264 825..1044 93 -> Plus