UFO03530.5prime Sequence
1164 bp (993 high quality bases) assembled on 2009-02-03
> UFO03530.5prime
CAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTACGCCTACA
GCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGCGACGAGGA
TCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGAGGACTTGA
ACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGCATGAGCGT
AGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCGGATAAGAA
GCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAAAGATCGGG
AGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAAATGGCGAG
CACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAGAGCAGCAA
ATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGAAAAGGACA
AAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGAGCAAACAC
AAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCCCCACGCCA
CGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATCGAAATCTG
AGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAAATTTTGAC
GATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAGAGCAGCAG
CAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCCTTCCTCGT
CAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGGCACTCTCA
ACTAGCAGTCGACCGACCTCCAAAAACCCGAAACTGTTGGCATCCACAGC
TAAGCTGGAGCCCTTGGATCCAACATTGCACTAGAACTTCCCACCATATC
CAATAACTACAAGCCCATGCCATTAAATCAGACAGTTATGGACGTCGTCG
CTACCAGGGTGGCTCCACCCAAGCCGCAAGCATCACGATACTTTAATGAG
TCAGGAGCCTCTAGCGGCAGGCCATCTCCTTCCAAACCTATGCGCACCAG
GATCTTATTCCGGGTGGGAGAACCTGTCCAAATCCTGCAGGTCCCTTTCC
CTTTTGAATCTCCTGCACCCCGCGTGCGTGCCAAAAAAATTGGATGCATG
GAATTACCGGGTGG
UFO03530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloA-RB | 2697 | CG6755-RB | 374..1505 | 9..1149 | 5075 | 97.2 | Plus |
EloA-RA | 2869 | CG6755-RA | 546..1677 | 9..1149 | 5075 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23252399..23252837 | 9..447 | 2195 | 100 | Plus |
3R | 32079331 | 3R | 23252890..23253269 | 445..824 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 23253332..23253509 | 832..1008 | 670 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2520 | 669..802 | 168 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6850 | 665..808 | 161 | 60.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2448 | 677..772 | 160 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6970 | 669..826 | 158 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2554 | 660..926 | 157 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6866 | 669..809 | 141 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2911 | 677..794 | 139 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7006 | 669..912 | 139 | 55.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6878 | 669..766 | 136 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2712 | 679..813 | 130 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6798 | 669..714 | 122 | 73.9 | Plus |
UFO03530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:51 Download gff for
UFO03530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RB | 387..1514 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:38 Download gff for
UFO03530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RA | 540..1667 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:43 Download gff for
UFO03530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloA-RA | 540..1667 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:43 Download gff for
UFO03530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23252892..23253269 | 447..824 | 100 | -> | Plus |
3R | 23253325..23253542 | 825..1044 | 93 | -> | Plus |
3R | 23252393..23252836 | 1..446 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:38 Download gff for
UFO03530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19078115..19078558 | 1..446 | 99 | -> | Plus |
arm_3R | 19078614..19078991 | 447..824 | 100 | -> | Plus |
arm_3R | 19079047..19079264 | 825..1044 | 93 | -> | Plus |