UFO03533.5prime Sequence
1111 bp (972 high quality bases) assembled on 2009-02-03
> UFO03533.5prime
CAGTCGACATGGAGCAGAACTCGAACAGCAGCGTTGCGGATACGTTTGCG
GAGGCACCAGCGACGGACGCGGATTACGGCACTGAGAACTGTTCCGGATC
CGGAATGTCGGTCGGCGACACCGTGAGCGCCAACCACGAGTTCCAGACCA
TGAAACCGGGTCCCGGTGTGGTGCACAAGGTGATGCCGGTGGCAAATAGC
GCCAGCAGTGCTACCGCAACCAACGGACGCACGCGCTCCGAGATGCCGCA
CAGCGAGCTGGTGAAGATGCTGTACTACCTGGAGGGCGAGCTGCAGGCAC
GGGATGTCTGCATAGCCGCCCTGAGGAACGAGCGGGTAAAGCAGCTCATT
GCACAGCTGCGCACCAAGCGACTGCAGCCGAACGATCCGTATGCGGCCAT
ATTCCGGGACAAGATCGCACTCAATGGCAATCTGATATCAAGGGAATCGT
CTACGCAGGCGGCGCAAGCGGAGATGGAGGTGCGCCAGATCATTGAGCAG
CAAATGGAGCAGCAGTATCAGATGGTTAGCAAGCAGAGGGCCACGCATGT
GCGTATGGTCAACATATTGACCGAATCGCTGGAAAACAATCAGCGTATGC
TCCAGGAGCTGGAGGAGGAGAAGCGCAAGCACGAGAACACCACGGCTCAG
GGTGACGACATCACCTACGGCCTGGAATTGGAGCGCAACAAGCTGAAGCA
GGACCTAGAGGAGGAGCGCGCTCAGTGGCCAAAATGGAGAAGGATCTGAA
GAAGCTGCAGGAGACGCTCGAGTACGAGCGCAATCGACAAAAGCAGATTG
TGCTGCTGTTGATTGCGGAGCGCAAAAGATCCTCCTGAAGTATATTGAAG
AGGGGAAACGATCGGAGGATCTGGCCCAAATTCTGGCCGAGGAGAAGCAG
CGCTTCGGATACCAATGCCGAGGGTCTCGAGGAGGAGAGCAAAAGTCGCT
TGCGCATGGAAGCATGAACTGGAGAAGCAACGCATGCCATGGAGCAGGAC
CGTAAAGTCCTGTTTGCCAAACTAGCCAGGAGAACTCCGGTACAGAGCTG
GACAGACTCACGCCCTACGAGCGGCCGAGCTCTGAAAAAGCATCACGCAC
TGGTTGCACGC
UFO03533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 3360 | CG10915-RB | 310..1406 | 9..1092 | 4940 | 97.6 | Plus |
| CG10915-RA | 2823 | CG10915-RA | 310..1406 | 9..1092 | 4940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18161029..18161876 | 9..854 | 4125 | 99.6 | Plus |
| 2R | 25286936 | 2R | 18161951..18162125 | 853..1028 | 585 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:47 has no hits.
UFO03533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:49 Download gff for
UFO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 305..1423 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:48 Download gff for
UFO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 302..1420 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:41 Download gff for
UFO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 302..1420 | 1..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:41 Download gff for
UFO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18161021..18161875 | 1..853 | 99 | -> | Plus |
| 2R | 18161952..18162125 | 854..1028 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:48 Download gff for
UFO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14048526..14049380 | 1..853 | 99 | -> | Plus |
| arm_2R | 14049457..14049630 | 854..1028 | 94 | == | Plus |
