UFO03534.5prime Sequence
1117 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03534.5prime
CAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGGCGGTCGTG
TCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCATGAATGGCT
TACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTGGCAGCTAA
TGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCATCACGCTG
CACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAGAATCGCGA
GGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGCTGGCGGAC
CGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTTACATCGTT
CACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATCAACACGTT
TCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATTGTGGATCA
TGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCATACATACG
TCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGAGTGCAGTT
GGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAACCGCGTGT
GGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGTGCGTCGGC
ACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTCACCATCAC
CGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTGCATACACG
CCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCGAGTCCTGT
CTGAAGACCATGGTGAACATTATCATCCAGCCAGACTGCCACAACTATCC
AAAGACGGCATTTGTGCTTATAAAATGTTCCTGGACTCCGCTATCCGAAA
TCACAAAGACGGAATGGAGAGGGAGAACGACAACGAGGACATTATCGTAC
ATATCTACATGCTTGTCGTCCTCTTCGGTGGAGCGACATTCGACGCTGTT
GCTCAACGGGCATTCACGGTCCGCGGGATCCGGATTGTCTATCCTAGTGC
CATCGCATCGTGCAGGAGATTCTTCACTGCCCGGACCAACCGGCCATTCA
CCGGGGGAGAGATCCTG
UFO03534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdm-RB | 3691 | CG7212-RB | 132..1223 | 7..1102 | 5110 | 98.3 | Plus |
| cdm-RA | 3253 | CG7212-RA | 132..1223 | 7..1102 | 5110 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18182596..18183094 | 661..163 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 18182097..18182533 | 1102..662 | 1610 | 94.6 | Minus |
| 3R | 32079331 | 3R | 18183191..18183348 | 164..7 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:10:40 has no hits.
UFO03534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:55 Download gff for
UFO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1223 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:55 Download gff for
UFO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1223 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:16 Download gff for
UFO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1223 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:16 Download gff for
UFO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18182097..18182533 | 662..1102 | 95 | <- | Minus |
| 3R | 18182596..18183092 | 165..661 | 100 | <- | Minus |
| 3R | 18183191..18183354 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:55 Download gff for
UFO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14008913..14009076 | 1..164 | 98 | | Minus |
| arm_3R | 14007819..14008255 | 662..1102 | 95 | <- | Minus |
| arm_3R | 14008318..14008814 | 165..661 | 100 | <- | Minus |
