UFO03539.5prime Sequence
1160 bp (1023 high quality bases) assembled on 2009-02-03
> UFO03539.5prime
CAGTCGACATGTCTGCTAGCTCCTCCAGCAACGCTTGCAAGCTCTTGCTG
CTCGGCCGCTGCCTGCGCGCCGTGCTCCTCAGCGTGGCCATCCAATTCCT
GCTGCTCACAGTGTTCCTGCTGTTTGTGAACTTCCAACTGTTGCATCCGC
TCGCCTGGGTGACGGGAACACTGCGTCTGGTAGCCAGTTGGTACACCTGG
TTTGCCAGCATCCCTCTGGTGGCCTCCGTCGTGCTCTACGGTGTGATTCT
TTGCCAGCAGCACTTGTCGGAGCGACGCTACTGCCCAACCCGCTACCGGT
GGCTCCTGCACTACGGTCCACGCAAGGTGCTCTTTCTGTTCGCCCACCTT
CTGGTCGGTCTGCTGACCGCCTGGCTCTACACGGGCTATCTGCACACAGA
CTATCAACACCTGAAATATAAGTGCTATGGCCAGGATTGCATTAGTGCTT
ACAATGTCTATCTATTAGGCATCGGTATGACCGCCGGCTGCTACTACTTT
GTCTCCGTTCACATGCGCAAGGAGATCTCCATTGAATTTCCCATTGTGGA
GCAATCGCGGGCGGAGAAGATGCGAGAGCTGCTCTACGCCAGTTTGGCCA
AATCTCTATTAAGTTCGCTGCTGCCTACGATCAGTTACACCGCCGTATTT
TGTCTTTTCGGACCCATGGTATGCCACAGACTTAGTCACATTCTCTCTGT
GGACATGGACGAGCGACTGGATGGATTCTTCGGAGTTGTTACCAATGTGC
GCCTGCTTTTTTACGGCTATTTGCTGACCGCACAGATTTTGAGCAACATG
CACCTAATGCGTTGCTTTTACGGCATTCTGCTCTCGGAGGATTTGCCACT
GGTGGTGACTAACCGCGAGCTGCTTTTGCCCATGAACAGGATAAAACCTT
GGTAGCGGGTCTCGGAGTTTCAATGTGTATGTAGTGCAGTGCTTGCTGCT
CATCACTTCTACAGCTGGCGTTGCGAAAACCTCGCCACAACGGGCAAAAG
ATATTCCAGCTGACTGAGCCGGGTAACGGCCAGCAAGTTGGCGCCTCCCT
CTGCCACCAATGCTTGAAGCATTCTCGGCAGCTTACCGAGAACTAACCGA
GTTCAATGCAAAGAATAAGAAACTCATGCGCCCGAATCCTCGCGAATGCC
GAGATACGAA
UFO03539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 144..1277 | 7..1133 | 5175 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925002..23925682 | 407..1084 | 2895 | 98 | Plus |
| 3R | 32079331 | 3R | 23924542..23924941 | 7..406 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:09 has no hits.
UFO03539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:46 Download gff for
UFO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-RA | 135..1256 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:23 Download gff for
UFO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 139..1260 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:39 Download gff for
UFO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 139..1260 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:39 Download gff for
UFO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23924537..23924941 | 1..406 | 99 | -> | Plus |
| 3R | 23925002..23925718 | 407..1119 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:23 Download gff for
UFO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19750259..19750663 | 1..406 | 99 | -> | Plus |
| arm_3R | 19750724..19751440 | 407..1119 | 97 | | Plus |
