Clone UFO03540 Report

Search the DGRC for UFO03540

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:35
Well:40
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5745-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03540.5prime Sequence

474 bp (397 high quality bases) assembled on 2009-02-03

> UFO03540.5prime
CAGTCGACATGATGGATAACAATGTAGAGCAATTAGCAGGAAAGAGCCAA
ACTGAAACAGCCGAGTCCACAGCAGCAGCAACAGGAACAGCAGGAGCAGG
TGTAGCAGTAGTAACCGTGGCAAGTGGAGCCGGACCAACGCCCGGCGCAA
ACTCCTCGACCTTTTGGAAAAACAGCGGACGTCGAGTGCCCGGACGACCC
AGTCCCAAGCGGGAGCTCGAGAAGGCGGCGGCAGTTGGGGTAGCGGTCGG
TCGCGGCGCTGCCCCCGGATCTGGCATGGTGTCCACCTTCACCGAGTACC
AGAAGTCGGTGAGCGATGCCTGGGACATGGGTGACGACGAGTTCTGCATC
ATCAGCAGCACGGAGGCGGCTGCCGCGGCCGTTGGAGCTGGGGATTGCGG
CTCATTTCTCCCGGGAAGGGTCGCAGACGGTGCTCTCACGTGATCGAAAC
GCACTCTCCAAGCACCAGAAACCT

UFO03540.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5745-RA 1816 CG5745-RA 79..542 9..470 2150 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21102277..21102659 9..391 1915 100 Plus
3R 32079331 3R 21102724..21102794 396..464 195 91.5 Plus
Blast to na_te.dros performed 2014-11-28 21:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..6884 35..176 209 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2391 54..139 178 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6834 35..149 172 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2912 50..178 166 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6804..6966 28..185 163 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6787 50..123 154 67.6 Plus
roo 9092 roo DM_ROO 9092bp 1060..1151 48..139 154 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6864 35..137 153 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2424 10..139 152 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6856 56..117 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6896 50..139 137 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1070..1143 49..122 136 64.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3267..3335 37..111 119 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2899 35..149 116 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7142..7200 41..98 112 70 Plus
roo 9092 roo DM_ROO 9092bp 1089..1152 35..98 112 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1538..1586 51..99 110 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2489 40..150 107 56.2 Plus
roo 9092 roo DM_ROO 9092bp 1094..1149 49..107 107 69.5 Plus
roo 9092 roo DM_ROO 9092bp 1116..1163 50..97 105 68.8 Plus

UFO03540.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:45 Download gff for UFO03540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5745-RA 61..529 5..474 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:50 Download gff for UFO03540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5745-RA 76..544 5..474 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:52 Download gff for UFO03540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5745-RA 76..544 5..474 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:52 Download gff for UFO03540.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21102274..21102661 5..393 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:50 Download gff for UFO03540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16927996..16928383 5..393 99 -> Plus