UFO03542.5prime Sequence
1140 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03542.5prime
CAGTCGACATGAGCGGCAATACACACGGACTCAGCTGGTTTCCACATTTT
CCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATACGAAGTGCG
CCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATATATCCGTGA
ACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCGTGGCCGCC
TCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCGGATGGCAA
AGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTGGGAGTACA
CACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACGAGCTGGAT
GCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGACACCTGCAT
CACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGCCAACTTCT
TCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAAATCATCGC
ACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTCGATCTGAG
GCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGTGCAGGGAC
TTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGGACTCGGTG
ATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGGCAGATTCA
GTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAGGACAAGCC
TGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCTACGACATC
CGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTAAAACGACA
GATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTTTTCCGTTT
GTTAATTGCCTGTCGTGCATTCGAAGGGATTTCGAGAGAGCTTCTGCTTT
TGGCAGATGCGCTGAACATCCTGGACTTTGCGACTGCCAGCCACCTTGCA
CCCGGCGCACAAGCATCGCCGGAAATTGCCACTTCTGATGAGGGTCGCTC
CTAAGCACCGGCCTTCGCGACTTCCATGGGGGCACGCCCCATCAGCAGCA
GCCAGAAAGTTGCAGACGAAATAGCGGAATTCCTGGAACT
UFO03542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2956 | CG7074-RA | 138..1231 | 9..1103 | 5045 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2218174..2218658 | 553..1040 | 2140 | 97.3 | Plus |
| 2L | 23513712 | 2L | 2217830..2218081 | 301..552 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 2217598..2217771 | 127..300 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 2217427..2217546 | 9..128 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:10 has no hits.
UFO03542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:44 Download gff for
UFO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 57..1093 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:21 Download gff for
UFO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 130..1166 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:06 Download gff for
UFO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 130..1166 | 1..1040 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:06 Download gff for
UFO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2217419..2217544 | 1..126 | 96 | -> | Plus |
| 2L | 2217598..2217771 | 127..300 | 100 | -> | Plus |
| 2L | 2217830..2218081 | 301..552 | 100 | -> | Plus |
| 2L | 2218174..2218658 | 553..1040 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:21 Download gff for
UFO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2217419..2217544 | 1..126 | 96 | -> | Plus |
| arm_2L | 2217598..2217771 | 127..300 | 100 | -> | Plus |
| arm_2L | 2217830..2218081 | 301..552 | 100 | -> | Plus |
| arm_2L | 2218174..2218658 | 553..1040 | 98 | == | Plus |
