UFO03546.5prime Sequence
1146 bp (1025 high quality bases) assembled on 2009-02-03
> UFO03546.5prime
CAGTCGACATGACGGGAACAGCGGCAGTGCGACTCAGCATTACGATACCC
ACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAGGTGGTCAA
TGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTCAACCATTG
AAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGCAGAGCCAC
AAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGCCACGATCA
GCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGTGCGCCAGA
TCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCAGTCTAGAG
GGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAACGCTACGA
GAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCGTGAGGGAT
CTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACGTTCAGCGT
GAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAACACATCAA
TGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGTGCGATCCC
GATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATGCGGCTATT
ACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTGGCGAGCTT
TGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCATGCTCATTT
CCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTGTGATCCAG
GATCGATCGCTCCGCAAGCTGGGCATGCTGAACGAACTGATTGGTATACT
GACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTGCACCACGG
ATCGCAAGTATGGCATTGGTGAGGGACTGACGGAGGAGATGCTATCCCGC
TGCGATCTGCACCTCCCCTCGTCGTTGGGTATTCCACGGCCATACCGTCG
GAGCGGCGCTGCCATCGGATCCTGGGCGGAATATTGGTTCTCTGGTTGGC
GTGCCATATCGCATCGCCTGCTACCGCCTGGCGGTACTCGTCTGCTGTGG
GGCGGGGCCTGCATCCAGATTCCGAAACGACATCGCTCCTCACGTG
UFO03546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 2261 | CG7384-RA | 216..1327 | 9..1114 | 5145 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10509706..10510238 | 541..9 | 2665 | 100 | Minus |
| 2L | 23513712 | 2L | 10508915..10509284 | 1053..686 | 1505 | 96.8 | Minus |
| 2L | 23513712 | 2L | 10509500..10509643 | 685..542 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:30 has no hits.
UFO03546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:48 Download gff for
UFO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 217..1335 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:55 Download gff for
UFO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 209..1327 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:55 Download gff for
UFO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 209..1327 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:55 Download gff for
UFO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10508850..10509284 | 686..1114 | 95 | <- | Minus |
| 2L | 10509500..10509643 | 542..685 | 100 | <- | Minus |
| 2L | 10509706..10510243 | 1..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:55 Download gff for
UFO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10508850..10509284 | 686..1114 | 95 | <- | Minus |
| arm_2L | 10509500..10509643 | 542..685 | 100 | <- | Minus |
| arm_2L | 10509706..10510243 | 1..541 | 99 | | Minus |
