UFO03548.5prime Sequence
1079 bp (968 high quality bases) assembled on 2009-02-03
> UFO03548.5prime
CAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTCCGGCCGTC
AAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAGCAGTCGCC
GGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCGCCAAGTGC
AGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCATATCCGCC
GGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAGCAGCCCGA
ATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAATGCGCAGGA
AGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGGCCAAGCGG
AAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTTCTGGTGAC
GATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACATCAACTACA
CGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCGGCTGGGAT
TCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCCTTTGCTCT
ATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGTCAATGGCT
ACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGACGCCCAAT
AACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGAGAGGGCAC
CATATTTGGCTTTATGAGTCCTACATTTTCGATCCACATATCGACGAGGT
GTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGGAGAATTACC
TCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTGTCTTCGCAACAG
TTGACGTCCAGATAAGACGGTTAATTTCAAAGGCAAATGGTGACCTCTTT
CTGCTCTGATGTTTTCGGTTTGACATTCATAACGTTTAACACGAGACATG
ACGGCAAATGCTGCTCTCATCGATGCGAGCGACGCGCTGATGCCACGGAA
CACGACTCATATCGACGCCTACTTCGATTCATGCTGCAGCGTACTCAATT
ATTCGTCTACTACATGCCGCACTATCTTT
UFO03548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..1354 | 4..1076 | 4630 | 96.4 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..1354 | 4..1076 | 4630 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716428..19717000 | 941..376 | 2335 | 97 | Minus |
| 3L | 28110227 | 3L | 19747844..19748416 | 941..376 | 2335 | 97 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 377..4 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 377..4 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:20 has no hits.
UFO03548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:47 Download gff for
UFO03548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 276..1279 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:33 Download gff for
UFO03548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..1257 | 1..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:48 Download gff for
UFO03548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..1257 | 1..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:48 Download gff for
UFO03548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19717700..19718075 | 1..377 | 99 | | Minus |
| 3L | 19716371..19716998 | 378..990 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:33 Download gff for
UFO03548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19709471..19710098 | 378..990 | 96 | <- | Minus |
| arm_3L | 19710800..19711175 | 1..377 | 99 | | Minus |
