UFO03549.5prime Sequence
1129 bp (1011 high quality bases) assembled on 2009-02-03
> UFO03549.5prime
CAGTCGACATGTCCGATGACGACGATATACAGTACATTAAGCGGCAGCGA
ACGCTGCACTATGGATCGCTCGAGGAATCGGAACGCAAGCGGCAAAATGC
CGCGGCGTCTGGGGCAGCAGCAACAACAACATCGGGAACGACGGCATCGT
CTGGGGCAGGAACAACAACAACTGGAACAGGCGGGCAACTGGAAGACATC
GATTCCGATGAGGATTACGAGGAGTCCACGAAAAAGACAAGCAACGCCAA
GCAGGCCGGAGCACCACCACCCACAGCCGCTACTCTGGCCAACAAAATTG
ACGATGACTACTTCGATCTAGAGATGGAAATGGAGCGCGACAAGGTGGCG
CTCCTTGAGGAATTTGAGCGGAAAAAGCGAGCACGACAGATAAATGTGTC
CACAGACGACACGGAGATCAAGAGCAATCTGCGCCAGCTAAACGAACCCA
TTTGCTATTTTGGAGAAGGACCGGCGGAGCGAAGAAGACGTCTTAAGGAA
CTCTTGGCTGGATTGGGCGAGAACGCCATCAACAAGAGGCAGTATGAGGA
TGAGGAGCGCAAGCAGCAACAGCGGGAGCAGGATCAGGCCACCTGGTACC
ACGAGGGACCCGATAGTTTGCGTATCGCTCGACTCTGGCTGGCGGATTAT
TCCCTGCCGCGCGCCAAGGATCGCTTGGTACGAGCACGTGAGGCCCTTGA
AGTGCCCAGCGCAGCACGTGCCGGCCGAATGGTGGAGATGCAGAAGAAGC
TCCAGTCGCTGGCTCCACTGTGCTCCCAGGTGGGTGACACACGGCCCGTG
AGTAGTGCTGCCTTCAGTGAAGACTCCTCACTCCTTCTGACCTCCTCATG
GTCGGGTCTCTGCAAGCTGTGGAGCGTGCCCGATTGCGAGCTGAAGCAGA
CGCTGCGTGGACATGCCAGCTATGTGGGCCGGAGTGGCTCTGCGGCCGGG
AGTAAAGCAGACGAGGAGAACGTGGTGACCATGGCTTCCGGTGCCACGAT
GGCGCCGTCAAGCTGTGGGGCTTCAACAACGAAGAGTCGATTGCCGACTT
CACGGCACATGCCGCCATCGCGTCTCTTTAGTAGCTCATCTTCCGGGCGC
TCTTGCACCGCTGCTACGACTCTACTGGC
UFO03549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U4-U6-60K-RA | 2058 | CG6322-RA | 132..1263 | 9..1129 | 5210 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17512736..17513781 | 1053..9 | 5040 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 23:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2527 | 82..179 | 189 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2430 | 82..172 | 182 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 115..280 | 161 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1611 | 84..208 | 159 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2395 | 114..179 | 150 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2422 | 85..179 | 145 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2462 | 115..180 | 141 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2475 | 114..172 | 141 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2667 | 115..305 | 141 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6945 | 114..278 | 138 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6823 | 114..180 | 137 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6898 | 85..180 | 132 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1160 | 114..200 | 132 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2997 | 82..311 | 130 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2522 | 115..197 | 128 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1120 | 526..587 | 127 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6874 | 85..180 | 116 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2449 | 88..179 | 115 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1179 | 115..168 | 114 | 70.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7964..8027 | 115..178 | 113 | 64.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9408..9471 | 115..178 | 113 | 64.1 | Plus |
UFO03549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:40 Download gff for
UFO03549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6322-RA | 123..1262 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:19 Download gff for
UFO03549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U4-U6-60K-RA | 124..1263 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:53 Download gff for
UFO03549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U4-U6-60K-RA | 124..1263 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:53 Download gff for
UFO03549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17512650..17513786 | 1..1129 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:19 Download gff for
UFO03549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17505750..17506886 | 1..1129 | 97 | | Minus |
