UFO03550.5prime Sequence
1108 bp (1013 high quality bases) assembled on 2009-02-03
> UFO03550.5prime
CAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCAGGAGAAAA
GACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCATTTATCGT
GGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCACCACAGTCT
ACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTAAAATTCCG
ATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACCAGTCGTGG
CCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAATGAAATAT
GGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCCAGGAAGCA
CACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCATGTCCAGAG
CGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGAGGAGCTGC
TACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACACCTTCCAAC
AAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTATCGCATAAA
TCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGAAGCTCCGC
AACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAACCGAGACTC
ACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTACATTGAGCC
CTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCGATCGCAGT
GGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGCGCGACCAG
AGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTGCCTCATCT
GCTGACATCGATTGCCCAGAATCTAAGCGCCAGCACACGACAGCCGGCCA
TCAACTGTGGTGTACATTCCACCGTGCCACATCGCTCCGCTTCACATCTA
CACAGCACGATCAGCGGCTGACGCGGACGACGTGATGCCTCATTTCGCCA
CCCTGGGGTGGCTCATCATTGCCTATCGCAGAACATGTGGTGCTGCGCAT
GGAGCGATAGAGCAGTCCTACCATGTCAGCACCACGGACACTGCAGTGAT
GCTGAACC
UFO03550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1764 | CG44255-RC | 101..1224 | 8..1108 | 4910 | 97.2 | Plus |
| CG44254-RA | 1826 | CG44254-RA | 101..158 | 8..65 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24914109..24914444 | 1013..688 | 1205 | 96.1 | Minus |
| 3R | 32079331 | 3R | 24915193..24915391 | 492..294 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24914506..24914700 | 687..493 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 24915447..24915589 | 294..152 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24915645..24915737 | 154..62 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 24917703..24917764 | 69..8 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:57 has no hits.
UFO03550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:39 Download gff for
UFO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RB | 67..1088 | 1..1013 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:15 Download gff for
UFO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..1116 | 1..1013 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:30 Download gff for
UFO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..1116 | 1..1013 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:30 Download gff for
UFO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24915447..24915586 | 155..294 | 100 | <- | Minus |
| 3R | 24915645..24915735 | 64..154 | 100 | <- | Minus |
| 3R | 24917709..24917770 | 1..63 | 95 | | Minus |
| 3R | 24914109..24914444 | 688..1013 | 96 | <- | Minus |
| 3R | 24914506..24914700 | 493..687 | 100 | <- | Minus |
| 3R | 24915193..24915390 | 295..492 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:15 Download gff for
UFO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20743431..20743492 | 1..63 | 95 | | Minus |
| arm_3R | 20741169..20741308 | 155..294 | 100 | <- | Minus |
| arm_3R | 20741367..20741457 | 64..154 | 100 | <- | Minus |
| arm_3R | 20739831..20740166 | 688..1013 | 96 | <- | Minus |
| arm_3R | 20740228..20740422 | 493..687 | 100 | <- | Minus |
| arm_3R | 20740915..20741112 | 295..492 | 100 | <- | Minus |
