UFO03553.5prime Sequence
1151 bp (983 high quality bases) assembled on 2009-02-03
> UFO03553.5prime
CAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCGACTTCTTT
GCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAACGACTGGA
TGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTGGCTGCGAT
CCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACAGCGGGCAC
ATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCCGGCAGCTG
GAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTCCGCCCTGC
TGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGAATCGCTTC
GTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGGATTGTGGT
CACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTCGATCTTCG
ATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATAACTCGATG
ATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACGGAGACGCC
TTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGCACGAATCT
GCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATCCGCATGTT
CTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACCAGATCTGG
ACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGATGTTCGAGG
ATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGCATCCCGGT
TATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATTGTGGAGCA
GCCGTTGTCCGTTTCGCTTACGGATCTATCAAAGCCCAGCTAGGTGGACA
GAATTTATCGGCGTTTTCTCAAGTGGTTCGAGGATCGACCGACAATATTC
ATCGCTATAGATTCGGGTTTCCGGCAAATGGTGCAGAACCATCAGAATCG
GAAGCCTTCTTTCTACCTGCACATTAATCAACTTGCCTTTGGAACGGGAA
TGCCACGTGGGGGGTGGACATTTGGAACCTCAGGGAATCCCGAAATGATT
CAACTGCCATGTATTTGGAAGGCCATTGCCAATATGCAACGAATTCCCAA
T
UFO03553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 137..1267 | 9..1151 | 4980 | 96.8 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 92..138 | 55..9 | 235 | 100 | Minus |
| f-cup-RD | 2532 | CG9611-RD | 92..138 | 55..9 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13701068..13701577 | 53..562 | 2550 | 100 | Plus |
| 3R | 32079331 | 3R | 13701632..13702093 | 560..1024 | 1855 | 96.1 | Plus |
| 3R | 32079331 | 3R | 13700701..13700747 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:10:24 has no hits.
UFO03553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:39 Download gff for
UFO03553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 110..1246 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:43 Download gff for
UFO03553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 131..1267 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:07 Download gff for
UFO03553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 131..1267 | 1..1151 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:07 Download gff for
UFO03553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13700695..13700745 | 1..53 | 92 | -> | Plus |
| 3R | 13701069..13701577 | 54..562 | 100 | -> | Plus |
| 3R | 13701635..13702211 | 563..1151 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:43 Download gff for
UFO03553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9526417..9526467 | 1..53 | 92 | -> | Plus |
| arm_3R | 9526791..9527299 | 54..562 | 100 | -> | Plus |
| arm_3R | 9527357..9527933 | 563..1151 | 93 | | Plus |
