UFO03555.5prime Sequence
1112 bp (979 high quality bases) assembled on 2009-02-03
> UFO03555.5prime
CAGTCGACATGCTGCAAAACAGTTTCAAACTGGCCCAGAGCCTTCGAAAC
GGCTTCTACAGAAACGCCTGGCGAGCGTTCAGCTCCCACGGACCCCGGCA
GCCACTGGTTTCGCCGGAGCGGCGCTTGGAAAAGGCGCATCCAACCTTCA
CGGAAAGGAGTCAGTTGAAGTACGCCCGGAGGCTGGTGGTCAAGTTGGGC
AGTGCAGTCATTACTCGAGAGGACAACCATGGACTAGCCCTCGGCCGTCT
GGCCTCTATTGTGGAGCAGGTTGCCGAGTGCCATTTGGAAGGACGTGAAG
TGATGATGGTCACCAGCGGAGCGGTGGCCTTTGGAAAGCAGAAGCTCGCC
CAGGAGCTGCTCATGTCGCTGTCCATGCGCGAGACACTAAACCCAAAAGA
TAGCAAAGAGTTTGACGGCGCTACGCTGGAACCGCGAGCAGCGGCTGCGG
TGGGTCAGTCGGGTCTGATGTCCCTCTACGACGCGATGTTTGCCCAGTAC
GGCGTCAAGATAGCCCAGGTGCTCGTGACCAAGCCGGACTTTTACAACGA
GGAAACACGCAACAATCTCTTCTGCACGCTCTCCGAATTAATTAGCCTGA
ATATTGTGCCAATCATAAATACTAACGACGCCGTCTCCCCGCCAATGTTC
ATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGGTATTCCCATTAA
GGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGAGGTGCAGCGGATCT
GCTAATCCTCATGTCGGACGTCGATGGCATCTACAATAAGCCGCCGTGGG
AGGACGGGGCCAGCTGATGCACACATACACAGCGACGACAGCAACAGCAT
CGAGTTTAGCAAAGTCAAGTGGGTACTGGCGGCATGGACTCCAAGGTGAA
GCAGCCACCTGGGCCTGGACCGGGGCGCTAGCGTGTTCATCTGCACGGAA
TGCAGAAGAAGCCATCCAAACCATTAATTGGCGGCCCGAAGCTGGTCACC
CTTCTTTCCCGAAGGCCACCAAAGGCCAATGCATGCCGGTCGAAGTGATG
GCCAGAAACGCTCGACCGGATTCCATGACGCTCCCGCCCGCTCAAGCAAG
TGCGTCAACCCT
UFO03555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7470-RB | 4686 | CG7470-RB | 146..1201 | 9..1053 | 4680 | 97.1 | Plus |
| CG7470-RA | 2868 | CG7470-RA | 146..1201 | 9..1053 | 4680 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21976966..21977136 | 517..687 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 21976295..21976461 | 105..271 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 21977192..21977372 | 686..863 | 740 | 97.8 | Plus |
| 3L | 28110227 | 3L | 21976582..21976724 | 268..410 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 21976784..21976895 | 409..520 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 21972147..21972242 | 9..104 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 21977435..21977569 | 869..1000 | 315 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:49 has no hits.
UFO03555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:38 Download gff for
UFO03555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-RA | 147..1153 | 9..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:08 Download gff for
UFO03555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-RA | 146..1152 | 9..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:17 Download gff for
UFO03555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-RA | 146..1152 | 9..1006 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:17 Download gff for
UFO03555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21972147..21972242 | 9..104 | 100 | -> | Plus |
| 3L | 21976295..21976459 | 105..269 | 100 | -> | Plus |
| 3L | 21976584..21976724 | 270..410 | 100 | -> | Plus |
| 3L | 21976786..21976893 | 411..518 | 100 | -> | Plus |
| 3L | 21976968..21977135 | 519..686 | 100 | -> | Plus |
| 3L | 21977193..21977381 | 687..868 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:08 Download gff for
UFO03555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21965247..21965342 | 9..104 | 100 | -> | Plus |
| arm_3L | 21969395..21969559 | 105..269 | 100 | -> | Plus |
| arm_3L | 21969684..21969824 | 270..410 | 100 | -> | Plus |
| arm_3L | 21969886..21969993 | 411..518 | 100 | -> | Plus |
| arm_3L | 21970068..21970235 | 519..686 | 100 | -> | Plus |
| arm_3L | 21970293..21970481 | 687..868 | 95 | -> | Plus |
