UFO03561.5prime Sequence
1083 bp (986 high quality bases) assembled on 2009-02-03
> UFO03561.5prime
CAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGGCGCTACTT
TCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTGTTTCCGCA
CCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCGCGGATTGG
CCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGGACAAGGAC
CCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACCTTGACAGA
CACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCTATTTCACT
ATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACTGCAATACC
ACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCTCCTGGCTA
CTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGCGATGAGCG
TGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCTGTGCCCTG
ATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCATCGTATAT
ATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGCGGGACGAT
TGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATAAAATGTTT
ACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGTCCTGGACT
GCCGTCCACGGAGGACTTGGTGAGGAATACTTCTCTAATGCTGGTCAACC
AGCACTTTTCGCTCAGTGGGCCAAAGCCTTTGCCCCCAAACGTCATCGAA
GTGGGTGGTGTACATATAAGTCCACCGAAACCGCTGCCCTCGGATCTTCA
GAAAATACTGGATACCGCACCCAAAGGAGTCATCCTAATTAGCTGGGGCT
CTCAGCTGAAAGCGTGTCTCTTTCCCGCTGCTCGGAAAGCTGGAATCGTT
AAAGCGATTGTAGATTGGAGCAGGAGGTCATCTGGAGTATGAATGATCCG
CTGCCCATAAGCAACAAATCTGCCCATTCAGGAATGTGCTGCCTCAGCGA
GACACCTCTGCCCATCAAATCTTAAGGGATTTA
UFO03561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17322-RB | 1903 | CG17322-RB | 155..1235 | 9..1083 | 4920 | 97.7 | Plus |
| CG17322-RA | 1807 | CG17322-RA | 59..1139 | 9..1083 | 4920 | 97.7 | Plus |
| CG17322-RD | 1900 | CG17322-RD | 152..1232 | 9..1083 | 4920 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18827508..18827886 | 265..643 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 18827946..18828289 | 644..986 | 1535 | 97.1 | Plus |
| 2L | 23513712 | 2L | 18827002..18827260 | 9..267 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:53 has no hits.
UFO03561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:36 Download gff for
UFO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RA | 49..1131 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:07 Download gff for
UFO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 145..1226 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:52 Download gff for
UFO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 145..1226 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:52 Download gff for
UFO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18826995..18827259 | 1..266 | 98 | -> | Plus |
| 2L | 18827510..18827886 | 267..643 | 100 | -> | Plus |
| 2L | 18827946..18828376 | 644..1068 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:07 Download gff for
UFO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18826995..18827259 | 1..266 | 98 | -> | Plus |
| arm_2L | 18827510..18827886 | 267..643 | 100 | -> | Plus |
| arm_2L | 18827946..18828376 | 644..1068 | 94 | -> | Plus |
