UFO03562.5prime Sequence
1130 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03562.5prime
CAGTCGACATGGCGCGAGTTCAGGCCAGCGACTCGTTGATTCCCCGCCAG
GTGTTCGAGGTTCCTCCGGCGGAACCCAATAATTCCACGGCGGACAGCGG
CAGTCAGGGTTCCGGGGTAAAGCTAAAGAAGCAGATCGGCCTGCTCGATG
GAGTGGCCATCATCGTTGGTGTAATTGTCGGATCCGGCATCTTCGTGAGT
CCCAAGGGAGTGCTCAAGTTCTCCGGCTCCATAGGACAATCCCTCATCGT
TTGGGTCCTCAGCGGAGTGCTCAGCATGGTGGGCGCCCTATGCTACGCCG
AATTGGGCACGATGATACCCAAATCAGGCGGAGATTATGCCTATATAGGC
ACTGCATTTGGTCCTCTGCCTGCGTTCCTTTATCTGTGGGTGGCCCTGCT
GATCCTGGTGCCCACGGGCAATGCGATTACGGCTCTGACTTTTGCCATAT
ATCTGCTGAAACCTTTTTGGCCTTCCTGCGACGCGCCCATTGAAGCTGTT
CAGCTGCTGGCGGCTGCCATGATATGTGTGCTGACGCTTATCAATTGCTA
TAATGTTAAGTGGGTTACGCGTGTGACGGACATCTTTACGGGCACCAAGG
TGGTTGCCCTCCTGGTGATCGTTGGCGCCGGAGTCTGGTGGTTGTTCGAT
GGAAACACAGAGCACTGGGATAATCCCTTCTCGGGAGGCCTTCAAGATCC
TGGATATATAGCCCTGGCCTTCTATAGCGGCCTCTTCTCGTACTCCGGCT
GGAACTATTTGAACTTTGTAACAGAGGAGCTCAAGGATCCGTACCGAAAC
CTGCCCAAGGCCATTTGCATCTCAATGCCGGTGGTCACGGTCATCTATAT
GATCACGAATATTGCATACTTTTCGGTTTCTCGCCAGACGAGATCCTTTC
GTCAGATGCAGTGGCAGTCACGTTTGGCGACAGATGCTGGGGATAATGTC
CTGATTATGCCCTTCGCTGGTGGCCTGCTCAACTTTGGTTCGCTGAATGA
GCGATCTTCGCGTCCTCCCGACTTTCCTTTCGTCGTGCAAGGAATGATCA
CTGCGCCGCCATTTCCTGAATACGTTATTGCCTGAACCTTGGTCCTCTGC
AATTTCTGGGCGGTCACTTGGTTGTGTCGG
UFO03562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 96..1182 | 9..1085 | 4985 | 98.1 | Plus |
| mnd-RA | 2491 | CG3297-RA | 541..1627 | 9..1085 | 4985 | 98.1 | Plus |
| mnd-RC | 2376 | CG3297-RC | 426..1512 | 9..1085 | 4985 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14990146..14990675 | 526..1051 | 2175 | 96.6 | Plus |
| 3L | 28110227 | 3L | 14987952..14988250 | 9..307 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 14989848..14990069 | 306..527 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:45 has no hits.
UFO03562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:35 Download gff for
UFO03562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RD | 81..1149 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:01 Download gff for
UFO03562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1494 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:48 Download gff for
UFO03562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1494 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:48 Download gff for
UFO03562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14987952..14988249 | 9..306 | 100 | -> | Plus |
| 3L | 14989849..14990067 | 307..525 | 100 | -> | Plus |
| 3L | 14990146..14990697 | 526..1069 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:01 Download gff for
UFO03562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14981052..14981349 | 9..306 | 100 | -> | Plus |
| arm_3L | 14982949..14983167 | 307..525 | 100 | -> | Plus |
| arm_3L | 14983246..14983797 | 526..1069 | 96 | | Plus |
