UFO03563.5prime Sequence
1068 bp (790 high quality bases) assembled on 2009-02-03
> UFO03563.5prime
CAATCCACATGTCTGGCTTAGAGTACGGGTTGCATAGATACGATGATCTG
CCGCTGGAGATTGTTTTGAAGATTTTCAGCTATCTCGGCTACTCGGACTT
ACAAGCGGCAGGATCCACCTGCCAGCGATGGCATGCGGCGCTGGATCAGG
CGGAATTTAACCAGCGCACGCGAGTCTGCTTCTCCAAGGTGGTGCTATCG
GATCAATTGACTCCTGGAGTGGATCTGATGCGCTGCAAGCGGCGTTTCCA
GCACTTCCTGTTCAAGGACGTGACACTGGGACAAGTAAAGGAATTGATGC
GCTTCATGGGCAGGACCGCTCAGTCCCTGGCTCTGGACAATGTGGATTTG
AATGACAAACAGTTCTACGGCATGCTGGGCGTGCTGCCCCATCTCCACTC
GCTGTCGCTGAAGCGCTGTCTGCCGCTGTTCATGTCCGGCTCTTTCCTGG
ACTCTTACAACAACTCCTGTCCTGACCTAAACGACCTGGCAAGCAATCTG
GCCGGCATCAAGGAGCTGACGCTGTGCGAGAACCAATACCTCACGGATGC
CATTCTTATGCGTCTCACATCGTTCATGCCCAGTCTGGAAGCGATTAACA
TGTCCGGCTGTCACATAGCCTTTCACAATGCTATTCATCGCAGATTTTAC
CCTGCCACCAGCTCCTCGGATCACGTTTTGCCCAGCGAGTCTGTGCTCAC
GTTCAAGTTCATCCTCACCATTCTGAACCTGCAGCGACGTACGTTGCGCG
TGTTGAACTTTACCCACACCCTAATTGGGCAGGCTTTGTTGGCCCTTTGC
GACCTCATCTCCCACTGCGCGCCTCTATTTGGCCGGATGCAGACAGCTTA
ACTGCACCACATCCTGAACTTTCTAGCACGACAGCCCCAGTTGTGTGCCC
TCGATTGTCGGCACAATGTGTGTTAACTATGAGATCTGGCTGCTTGGTAC
CACAATCCCAGTGGAGCACTTTGAAGTGACCGCTGCTGAACATACAATGG
CTGGTGCCATCCACTTGCCCAGCTAAGGACTCAAAGTCTGGACATCCTAA
CTGCGATAACTGACAAGC
UFO03563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-RB | 2804 | CG8272-RB | 102..1181 | 9..1068 | 4555 | 96.2 | Plus |
| CG8272-RA | 2804 | CG8272-RA | 102..1181 | 9..1068 | 4555 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8890241..8891120 | 932..58 | 4000 | 98.3 | Minus |
| 2R | 25286936 | 2R | 8891250..8891300 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:44 has no hits.
UFO03563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:34 Download gff for
UFO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 100..1023 | 9..927 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:39 Download gff for
UFO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 102..1025 | 9..927 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:39 Download gff for
UFO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 102..1025 | 9..927 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:39 Download gff for
UFO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8890246..8891118 | 60..927 | 98 | <- | Minus |
| 2R | 8891250..8891300 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:39 Download gff for
UFO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4778755..4778805 | 9..59 | 100 | | Minus |
| arm_2R | 4777751..4778623 | 60..927 | 98 | <- | Minus |
