UFO03564.5prime Sequence
1138 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03564.5prime
CAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCACAGATGCT
TCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAATGAGAAACC
CAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATGGTACTTGA
GCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAGCCATTGTT
TCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGATGAGGACGC
CAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGGCATCGTTA
CCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTCAGGGCGGA
ACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTGCCGCAGTG
GAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGCTGAGCGGG
AGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTATTGCCGTG
TCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTGGGAAAAAT
CCTTAAGTACGTAACTCCATTGACCATTGTACCCACTGTGTCCCTGGTGG
GTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGCATTGGGGC
ATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAAATAATGTC
GAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGGCTTGAAAT
TCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGACCATCATGA
TAATGTGGGGTCTGTGCGGAATTCTGACTGCTACGGATGTCTTTCCTCCG
TCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTGACCAGTGCAAA
GTGTTCTATGTCCCGTATCCGGGACAGTTTGGCTGGCCATCGGTGACGCT
GTCCGGCGTGCTTGCACTTTGGCCGGAGTACTTGCCTGTACGGTGGAGTC
ACTTAGTATATTCCAACGGGTGTCAAGATGTCCGGCGCCCACTCGCCTCC
GCTCCATGCGATCATCCCGGATCGGTACGAGGCTTGGCACTTCCTCGCGA
TGTGGGGGGCTGAATGAACATACTTGACGAAATTGGCC
UFO03564.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1219 | 8..1098 | 5120 | 98.5 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1219 | 8..1098 | 5120 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 661..42 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10309292..10309699 | 1064..661 | 1690 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:19 has no hits.
UFO03564.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:33 Download gff for
UFO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 93..1186 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:52 Download gff for
UFO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 111..1204 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:34 Download gff for
UFO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 111..1204 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:34 Download gff for
UFO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10309267..10309698 | 662..1085 | 96 | <- | Minus |
| 3R | 10309899..10310518 | 42..661 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:52 Download gff for
UFO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6134989..6135420 | 662..1085 | 96 | <- | Minus |
| arm_3R | 6135621..6136240 | 42..661 | 100 | <- | Minus |
