UFO03568.5prime Sequence
1120 bp (1024 high quality bases) assembled on 2009-02-03
> UFO03568.5prime
CAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGGAGATCGAG
TCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCCTGCTTCGA
CTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGGCATCTTCA
TTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGCATCTGACC
TTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTCCAGCTCCG
CCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTTCCGCGCCC
ACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGCGGGCGGCC
CAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGAC
GCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGAGGGCAACG
AAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATGAGGTGGAC
TTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCACCCACCGT
TGCTCCGGTCATCAGCGTTGAAACGCAACAAGGTGGCGCCCCCAGCGTGA
ATCTGCTTAATTCCGTGGTGCCGGCAGCAGTGCCGTCGTCCATAGGCGCG
CGAAAGGTGCAGCCGAAGAAGGGTGGACTGGGTGCTCGCAAAGTGGGCGG
TCTTGGAGCCACGAAAGTTAAGACTAACTTCGCAGACATCGAGGCCCGTG
CCAACGCGGCTAACGAGATGAAGACATCAGCTGCAGCAGCACCTGTGGTC
AAGCCACAGACGGCCGAGGACGAACTAGAGACGGTGGCCAGCATGCGATT
GGCATACCAAGAACTCTCCATGCAGAAGACCCGCGAGGAGGCCAAGCTTA
AGACCATGGACCCTGCTAAGGCTAAACAGATGGAGCGGCTGCGCATGGCT
TCAACTGCGAGGCTCCGAACATGGCCACTCCGCTCTCGGCGATTTGAAAC
TATCAGCAGTCGGCGCCCTAAGCAACTCTTCCTATTGAAAGCAAAATTTT
TCACTGACTTCCCTATACGAATAATAACACGGGTGACGAAGAGGAGAATC
TACGAAAGCGGGACCTCATT
UFO03568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ArfGAP3-RC | 2580 | CG6838-RC | 382..1509 | 5..1113 | 4955 | 97 | Plus |
| ArfGAP3-RB | 2307 | CG6838-RB | 109..1236 | 5..1113 | 4955 | 97 | Plus |
| ArfGAP3-RA | 2689 | CG6838-RA | 396..1523 | 5..1113 | 4955 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22716569..22716892 | 413..90 | 1620 | 100 | Minus |
| 3L | 28110227 | 3L | 22715681..22715998 | 993..678 | 1400 | 97.5 | Minus |
| 3L | 28110227 | 3L | 22716049..22716204 | 684..529 | 750 | 98.7 | Minus |
| 3L | 28110227 | 3L | 22716297..22716416 | 531..412 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 22716971..22717055 | 89..5 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:35 has no hits.
UFO03568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:29 Download gff for
UFO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6838-RC | 378..1466 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:57 Download gff for
UFO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..1480 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:41 Download gff for
UFO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..1480 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:41 Download gff for
UFO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22715587..22715998 | 678..1076 | 94 | <- | Minus |
| 3L | 22716056..22716202 | 531..677 | 100 | <- | Minus |
| 3L | 22716298..22716414 | 414..530 | 100 | <- | Minus |
| 3L | 22716569..22716892 | 90..413 | 100 | <- | Minus |
| 3L | 22716971..22717059 | 1..89 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:57 Download gff for
UFO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22708687..22709098 | 678..1076 | 94 | <- | Minus |
| arm_3L | 22709156..22709302 | 531..677 | 100 | <- | Minus |
| arm_3L | 22709398..22709514 | 414..530 | 100 | <- | Minus |
| arm_3L | 22709669..22709992 | 90..413 | 100 | <- | Minus |
| arm_3L | 22710071..22710159 | 1..89 | 97 | | Minus |
