UFO03569.5prime Sequence
1104 bp (995 high quality bases) assembled on 2009-02-03
> UFO03569.5prime
CAGTCGACATGGCTGTTGCAAAGAAGGAAAAATTTGAGGCAAAAAAGAAA
AGCCCTGAAAAGGGAAAACAGCAGAAAGCCAAAGTTGTTCCTGTCACACC
GCCACCAAATGTAAAACAACGAACTGTGGTCACTCCTTGGCGAGACACGC
TGGAATTTAATACAACGTACAAATGGTTGTTTGGCAAGTCCAACACACCA
GCCACATGGCGTCAAGCGCTCAGTAAAATCCGCATTTGGTGTCTGCGAAG
AGGAAGTCTCTGCCCGGCAGCGGTTTTGGCCACATCGGTGCTTGTTCAGG
CGCACTTGGAGGACCAGGAGGGCAGCGCCAAAATACAGGACACCTATGCC
AGTGCCTTTACACGATTCTACAACTTTATGTCCTCCATTATCCAGGGACA
CAACATGTCCAGCATGTATGAAACGGCCAAGGAACTGGGCCTCCAGTCGT
TCATCGTTGATCTGCGCCACTTGTGCGCCCATGGACAGGAGCTGCCGCCT
GTGGAGGTGCTGAGAAACACCTCGAATCATTGTCTGGAGTGGCTGCGCAC
CTACTACTGGTTGCCACACATGGAAACCATGTCCAATTTGGATGCTGGCA
AACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGACAGATCTT
CTGGAGATCTACGATCTAACCCTGGAGTGCCATATCAAGGAGGCTGAGAA
ACTAAAGGCCATTAGCAAGCTAAAATCCAGTGGTGAATTCAATAAGATAC
GAGTCTACTCCTCCAGCAAGAAGGCGAAGACATCGAAAGAAATTCTGAGT
GCTGTGTTAGGTGATCTAAGTGCGTTGGTCAAAAGGAGTCATCATCGATG
AAGGATCTGCTGGACATATATACAAATGCCTGCTTAAATGAAATACTTCC
CTGGCGTTGGCTTGAAATCCACGACCACGAAGATGTCATCATTGCAGCAC
ACCAGGGACTCTTTCCGTCTATTGGCCGGTGCACGGATAATATCGAGAAG
GTTTTTTTGTCCTTAGTTCAACTGAGTGAAACCAAACCGAGTCGGACCAA
GGCGTCCTGGAGCCACTTACTGGCCAAGAAAATGTGGAACATTGGAGCTG
TCGA
UFO03569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32075-RB | 1751 | CG32075-RB | 77..1158 | 8..1085 | 4905 | 97.5 | Plus |
| CG32075-RA | 1955 | CG32075-RA | 281..1362 | 8..1085 | 4905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11063530..11064461 | 1077..149 | 3940 | 97 | Minus |
| 3L | 28110227 | 3L | 11064520..11064661 | 149..8 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:42 has no hits.
UFO03569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:28 Download gff for
UFO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32075-RA | 269..1345 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:04 Download gff for
UFO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32075-RA | 273..1349 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:13 Download gff for
UFO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32075-RA | 273..1349 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:13 Download gff for
UFO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11063534..11064461 | 149..1073 | 97 | <- | Minus |
| 3L | 11064521..11064666 | 1..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:04 Download gff for
UFO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11056634..11057561 | 149..1073 | 97 | <- | Minus |
| arm_3L | 11057621..11057766 | 1..148 | 97 | | Minus |
