UFO03573.5prime Sequence
1119 bp (911 high quality bases) assembled on 2009-02-03
> UFO03573.5prime
CAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATCAAAGCTCG
GCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGCCGTGCGGA
TCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCAGCATGCGG
AAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCAAGGCGAAA
AAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCTGTATCGTC
GCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAATGGCAACG
GAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATGTATTTAAC
TATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTCGAGTACTT
TCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGAAACAAACA
AACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAGCGGATTCA
GTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTGGATGGTAG
TTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACATCGCCCGAA
GACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATGATTGCTCC
AAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTTTCCACCAC
AAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGCCATCCGGC
TGTGCGAACACTGCCTTTGGCTGCTGGACACGCCGAAAGGATATGCACCC
AAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAAATTCG
TCAACTACAAAAAGAAGTTACCCCGGGATCTGGACATGTATCTAAAGATC
ATCAATAGCTTGAACGGCTGCATGACCATATCTTCACGTTGGCGGATGCA
GGTGCTTTGCGCGGCAAGATTGGAACAAGTGGCAGAGGCCATGGACATGA
AGGAGCAGCCGCATTCTAGTCATATTTTGGTGAACAGGCAGCCGGGAGGA
AGGCATAAAGAAGGCAATTCGGTTGGGCTGCATCAAGCACTCAGGAAGCG
AAATGTTATCGCTGCCCCC
UFO03573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 261..1363 | 9..1119 | 5000 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160092..8160758 | 9..675 | 3335 | 100 | Plus |
| 2L | 23513712 | 2L | 8160817..8161252 | 676..1119 | 1435 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:59 has no hits.
UFO03573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:25 Download gff for
UFO03573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-RA | 246..1355 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:23 Download gff for
UFO03573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1363 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:59 Download gff for
UFO03573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1363 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:59 Download gff for
UFO03573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
| 2L | 8160817..8161252 | 676..1119 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:23 Download gff for
UFO03573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
| arm_2L | 8160817..8161252 | 676..1119 | 93 | | Plus |
