UFO03575.5prime Sequence
1156 bp (1023 high quality bases) assembled on 2009-02-03
> UFO03575.5prime
CAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAGTGCTGTGC
TCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGCATCGTCTG
CTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCGCTATGGAT
TGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACTCCTTTATT
GGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCTGAGTTGGA
TGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAAATCTAATC
CCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAGGTGGCTCC
AAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGTTTCATACG
CAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATTCGACTTGG
ACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATGGGGATAAG
GACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTCGATCGCGA
GGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAAGTTCCGGC
TGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGGATGCCATT
CACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTCGCCGATGT
GCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTACGAGAAAC
TGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCTGCCCGGCC
AACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTCACGCTGAG
CAACTCGAACAAGAACTACACCATGGGCACCTACATCAATAAGGAGGCAG
GCGGCGGAGCTCCGGGTCCCTACACGAATGCCAGCGCTTTCTGGCCCATT
ACGAAATTTGCACCGAGGTGATGACAAGTCCAAAGGATGGACGGTAGAGT
GTGATGACCGCTGGCCTGTGCCCTACACCTACCAGGACCACATGTGGTTG
GCTACAAGAACGAGCATCCATACAGATCAGATGACTTTATCAGCACGGGA
TACCCTTGCGCCTGACCTGGGCCATAGAATTGAACGACTTCATGATGTGC
GCAGAA
UFO03575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht5-RA | 2122 | CG9307-RA | 131..1273 | 9..1141 | 5150 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13768091..13768713 | 12..634 | 3115 | 100 | Plus |
| 3R | 32079331 | 3R | 13769073..13769398 | 758..1079 | 1155 | 94.5 | Plus |
| 3R | 32079331 | 3R | 13768861..13768984 | 635..758 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:41 has no hits.
UFO03575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:23 Download gff for
UFO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht5-RA | 120..1275 | 1..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:44 Download gff for
UFO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht5-RA | 122..1277 | 1..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:38 Download gff for
UFO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht5-RA | 122..1277 | 1..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:38 Download gff for
UFO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13768091..13768713 | 12..634 | 100 | -> | Plus |
| 3R | 13768861..13768984 | 635..758 | 100 | -> | Plus |
| 3R | 13769074..13769470 | 759..1144 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:44 Download gff for
UFO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9593813..9594435 | 12..634 | 100 | -> | Plus |
| arm_3R | 9594583..9594706 | 635..758 | 100 | -> | Plus |
| arm_3R | 9594796..9595192 | 759..1144 | 92 | | Plus |
