UFO03576.5prime Sequence
1108 bp (1014 high quality bases) assembled on 2009-02-03
> UFO03576.5prime
CAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCGCGTTGCTG
CTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGCGAGCGGGC
TGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGCGGTAGCTC
CTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACGATGATGAG
CCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGATGAGGAGGA
GGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCAGGCTGCTC
CAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATGATGATGAC
GATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGATGAAGATGA
GGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAGCGCTGTGG
CCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTGCCGCCTCC
TCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCCGAGTCCGG
AAATGCCGCTGAGGTCCTGGCCGCTGGAAATGCTGCCGATGAGTCCGTTT
CCGCTGCCGTTGCTCCGGCGCAAAACGCTGCCGCCAGCAGCAGCAACAAC
GAAGGTATCGCCGGTGACGACGACGAGGAGGCCGACGATGATGATGACGA
TGACGACGATGACATTATCGGCGATGACATCATCGAGGCCCGCCGTGAAG
CACGTGACCTGAAGAACAACGTCATCGATATGTCCACGGATGCTTTCCAG
GCCCGCCACAACCACTTCATCGATGCCATCTTCTCGAGGATCAATCGCAT
TGTTTCGGAAAACTATGATCCCTATGTCGTCAATCTAACGGGTCGCTCCG
TTTTGCCAAATGCCGCCAGTGGTCAAATGTGAAGGCCGCTACAGAGCATC
CGACGAGCAGCAGTCGAGTCACAGAGCTGAGACCCGCGCTCGGAGCCCGT
TCGTCATCGACAGAGCACGAGCTGCGGGAGCTGCAGGACATTGACGCAAT
ACGTCGACTGCATCAAGCATGAAAAGCAGCCACATCCTGCACGATCGATC
GATCGGAT
UFO03576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ect-RB | 2046 | CG6611-RB | 132..1135 | 7..998 | 4670 | 98.4 | Plus |
| ect-RA | 2103 | CG6611-RA | 189..1192 | 7..998 | 4670 | 98.4 | Plus |
| ect-RF | 2070 | CG6611-RF | 132..1159 | 7..998 | 4420 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10195441..10195710 | 656..387 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 10196208..10196435 | 234..7 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 10191619..10191807 | 941..754 | 880 | 98.9 | Minus |
| 3L | 28110227 | 3L | 10195819..10195972 | 387..234 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 10194893..10194997 | 757..653 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:34 has no hits.
UFO03576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:22 Download gff for
UFO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RB | 134..1159 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:00 Download gff for
UFO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RA | 183..1208 | 1..1010 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:11 Download gff for
UFO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RA | 183..1208 | 1..1010 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:11 Download gff for
UFO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10191573..10191807 | 754..978 | 94 | <- | Minus |
| 3L | 10194897..10194995 | 655..753 | 100 | <- | Minus |
| 3L | 10195443..10195709 | 388..654 | 100 | <- | Minus |
| 3L | 10195819..10195971 | 235..387 | 100 | <- | Minus |
| 3L | 10196208..10196441 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:00 Download gff for
UFO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10184673..10184907 | 754..978 | 94 | <- | Minus |
| arm_3L | 10187997..10188095 | 655..753 | 100 | <- | Minus |
| arm_3L | 10188543..10188809 | 388..654 | 100 | <- | Minus |
| arm_3L | 10188919..10189071 | 235..387 | 100 | <- | Minus |
| arm_3L | 10189308..10189541 | 1..234 | 98 | | Minus |
