UFO03579.5prime Sequence
1133 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03579.5prime
CAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTCCGGTGAAG
TGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTGTTCCTGGT
GCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGCCGAATTTC
GGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTACGGAAGCC
TTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTCCCAATAAT
GGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAAGGATACGC
TGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGGAGTACTGT
AATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTGGGCTGCAG
TCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTTTTTGAGCA
TGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGATTATCCAA
GCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATCAACCATGA
GCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGAGGATGAGC
CACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCATTGCCTAC
GCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCCACCAATCT
TACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCACCGAACAGA
TGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGTTGGTCTAC
ACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGTCTGTGGCG
TCCCAGAGCAAGGAGGCACAGGAAGTCCAGAGGGACGAGAGGGCGCCGAT
GTCGCCAAAAGGTTATCGATCAGCGCTACAAGGATCTGGGTTCCATGTCC
ATTCACGAGATCCAAGTGATGATTCTGTTCATTTTTATGGTTGTGATGTA
CTTACCGCAGCCGATCTTTTGGATGGCGATTGCTGATTCAGACATCGTAC
TCTATGCCACTATTTTGTCGCGCCATGGCTCAGCTGCCGCATTAGCTTCT
ACTTACGACCAAACGTGTCAAGTCAAGTCAATC
UFO03579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RD | 2581 | CG3979-RD | 272..1269 | 9..1003 | 4900 | 99.6 | Plus |
| Indy-RA | 2484 | CG3979-RA | 175..1172 | 9..1003 | 4900 | 99.6 | Plus |
| Indy-RC | 2600 | CG3979-RC | 291..1288 | 9..1003 | 4900 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18830327..18830734 | 1003..599 | 1875 | 99 | Minus |
| 3L | 28110227 | 3L | 18830839..18831035 | 599..403 | 970 | 99.5 | Minus |
| 3L | 28110227 | 3L | 18831093..18831242 | 409..260 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 18831494..18831621 | 144..17 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 18831311..18831427 | 260..144 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:07 has no hits.
UFO03579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:21 Download gff for
UFO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RA | 147..1163 | 1..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:19 Download gff for
UFO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..1300 | 1..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:22 Download gff for
UFO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..1300 | 1..1012 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:22 Download gff for
UFO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18830327..18830734 | 599..1003 | 99 | <- | Minus |
| 3L | 18830840..18831028 | 410..598 | 100 | <- | Minus |
| 3L | 18831093..18831241 | 261..409 | 100 | <- | Minus |
| 3L | 18831311..18831427 | 144..260 | 100 | <- | Minus |
| 3L | 18831495..18831628 | 9..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:19 Download gff for
UFO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18823427..18823834 | 599..1003 | 99 | <- | Minus |
| arm_3L | 18823940..18824128 | 410..598 | 100 | <- | Minus |
| arm_3L | 18824193..18824341 | 261..409 | 100 | <- | Minus |
| arm_3L | 18824411..18824527 | 144..260 | 100 | <- | Minus |
| arm_3L | 18824595..18824728 | 9..143 | 97 | | Minus |
