UFO03581.5prime Sequence
1068 bp (910 high quality bases) assembled on 2009-02-03
> UFO03581.5prime
CAGTCCACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAGCGCCCCCG
GGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCGCAGTTTCC
ACCTCCCGGATTTGGGGCCCCTCCCCCGCCGGAGCTGGCCGCCGCCTTCG
GGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGCCGGACGGA
CGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGGGAGAAGCC
GGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTGTCCCTGGA
AGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACGTGGCCACC
AAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATGAAGGCCAA
GGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGCAGCCATGA
CATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGGCTAGTATT
CTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCTGAGATCCA
CTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGCGATGGATC
AGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAACAAAATGCT
AAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGATAAACGCGA
GGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGTGCCATCAA
ATGCGAACTGGGACCAGTGTGTGAAAATCATATCAAAGGATCCGCGATAC
GCAGCCTTCAAAATCTGAACGAGCGCAAGCAAACATTCAATGCCTACAGA
CGCGTAGATTAAGACGAGTGCGAGGAGTCTCGCTTAAAGCCAAGAAGGCA
AAGAGGACTTGGAGCAGTTCCTTATGTCTGCGATAGATGATCTCGCAGAT
GAATAATTTTCGTGTGAAGAGTACTTGCAGGACGCGAACATGGACCGGCG
CTGCGGCACCGGATCGGCTAAATATTATCCATGACTGTATATTTTAATTT
TACGGATGCGCGAGAATG
UFO03581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3542-RA | 2906 | CG3542-RA | 163..1214 | 9..1050 | 4605 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3023388..3023794 | 9..415 | 1975 | 99 | Plus |
| 2L | 23513712 | 2L | 3024142..3024549 | 648..1044 | 1175 | 92.2 | Plus |
| 2L | 23513712 | 2L | 3023854..3024090 | 416..652 | 1170 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 23:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 1268..1298 | 603..633 | 110 | 83.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 2721..2751 | 603..633 | 110 | 83.9 | Plus |
UFO03581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:20 Download gff for
UFO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-RA | 147..1214 | 1..1060 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:43 Download gff for
UFO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-RA | 156..1223 | 1..1060 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:30 Download gff for
UFO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-RA | 156..1223 | 1..1060 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:30 Download gff for
UFO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3023381..3023794 | 1..415 | 98 | -> | Plus |
| 2L | 3023854..3024086 | 416..648 | 100 | -> | Plus |
| 2L | 3024143..3024521 | 649..1016 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:43 Download gff for
UFO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3023381..3023794 | 1..415 | 98 | -> | Plus |
| arm_2L | 3023854..3024086 | 416..648 | 100 | -> | Plus |
| arm_2L | 3024143..3024521 | 649..1016 | 93 | -> | Plus |
