UFO03583.5prime Sequence
1132 bp (1012 high quality bases) assembled on 2009-02-03
> UFO03583.5prime
CAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGCAGGTGAAG
GGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGTGGTGGCGG
CGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCTGCTCAAGC
CCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGGAGATCACC
AAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTCGTGGTCTA
TAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGGCAATACGG
TCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACTCCGATGAG
GGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCACTGCCCAT
GCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGTCGACGGTG
AGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAAAGGACGCC
GCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAGGCCAAGGG
CACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGGTGCTGCTG
CCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCGTTTCATCC
AAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGTGGTGCCCT
CACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCATACCCCCAC
CCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCTATGATTCC
TATATGGAGAACTTTGCGGAGTCCCAGAAGGACGGCACCAAGAAGGAGGA
GCGCAAGCGCGGCAAGAGGGAGAAGAGTCCCGGGATAGTCGGCCATTGCC
GAGCAGCTCACAAGAAGTATCTCAAATGCTGGCAGATACTCGAGCGCATG
ATCAATCAGATATCTACGATGACATCGCCCACGACTATCGCTACTGGGAG
GATCCGGCTGATGAGTTCTGAAGGTGAGGCAACCTGCTGCCACTCTGAGG
TTTCAGTACGAACAGAACAAGAAGATGACGTACCGACTCTGTTCATCGGC
TTCTATGGATTCTCTCTCGCCCGCTCTGATTC
UFO03583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1694 | 9..1087 | 5105 | 98.5 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..1274 | 9..1087 | 5105 | 98.5 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..1277 | 9..1087 | 5065 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 57..487 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982460 | 722..1078 | 1355 | 95.9 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 488..722 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:23 has no hits.
UFO03583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:26 Download gff for
UFO03583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..1251 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:27 Download gff for
UFO03583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1274 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:31 Download gff for
UFO03583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1274 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:31 Download gff for
UFO03583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981801..20982035 | 488..722 | 100 | -> | Plus |
| 2R | 20982097..20982471 | 723..1087 | 95 | | Plus |
| 2R | 20981313..20981741 | 59..487 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:27 Download gff for
UFO03583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16868818..16869246 | 59..487 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 488..722 | 100 | -> | Plus |
| arm_2R | 16869602..16869976 | 723..1087 | 95 | | Plus |
