UFO03585.5prime Sequence
1107 bp (950 high quality bases) assembled on 2009-02-03
> UFO03585.5prime
CAGTCGACATGAAGTTCCTGGGCATCGTCCTTTGCGTTGCCTTTTTGGCC
CTTCAAGCTAAGTCAGCCCAAGCTGTTTGTGGCTATGAGTCTTGCCATGA
AACCAAGTCAAACATGATCAACATACACTTGGTGCCCCACTCCCACGACG
ATGTGGGCTGGCTGAAGACCGTTGATCAGTACTACTATGGCCACAGGAAT
AACATTCAGCACGCTGGAGTGCAGTACATCATCGACACCGTGATCTCCGA
GCTGATCAAGAACCCCGATCGTCGGTTCATCCAGGTGGAGACATCCTTCT
TCTCCAAATGGTGGAACGAGCAGTCGGAGACCATGAGGGCAGTCGTGAAG
ATGCTGGTGAATGAGGGTCGCCTTCAGTTCATCAATGGAGCCTGGAGTAT
GAACGATGAAGCTGCCGTAAACTACCAGAGTGTGATCGACCAGTTCACAG
TCGGATTGAAGTTCCTCGATGACACTTTTGGAGTTTGTGGTCGTCCTCGT
GTTGGATGGCAAATCGATCCCTTTGGTCACTCCCGTGAGCAAGCCTCTAT
CTACGCTCAGATGGGATTCGATGGCGAGTTCTTTTCCCGCATGGATCACA
ACGACAAAGGCAGGCGGATGAACGATCTGGCTCTAGAGATGATTTGGGAT
GCCAGTGAGTCGTTGAGCCAAGTCAAGCTCTTCACTGGACTCCTGTACAC
CTTCTACTGGGACACTCCCGGCTTTTGCTTCGACGTTCACTGCAGCGACG
ATCCCATTATTGACAGTGATAGTTACGATAACAACGTCAAGTCAAGGGTG
GATGATTTCATCGCCTACGCCGCTCAAGTTGCGGAAAAGTTCCGCACAAA
ACACATTATGATTCCAATGGGCGGTGACTTCCAGTATGAAGATGCCGAGG
TTCGCTACCAACAATCATGCACCTACCTGATCAAGTACGTCAACGAACGT
CATCCAGTGGCTCCAAAGTACAACATTATTCTACTCACACCCCACTTGCT
ACCTGAACTCCGTGCACAAGAGTGTGCAGTCTACCTAACAAAACTCTGGG
ATTTCTTCCATACGACAGTGATACTAACAGCTTTGGAACCTGGTATAACC
TCGTTCC
UFO03585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9466-RB | 3074 | CG9466-RB | 68..1141 | 9..1084 | 4940 | 97.9 | Plus |
| CG9466-RA | 3063 | CG9466-RA | 68..1141 | 9..1084 | 4940 | 97.9 | Plus |
| CG9468-RA | 3160 | CG9468-RA | 138..1067 | 77..1010 | 1470 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8775182..8775623 | 902..461 | 2180 | 99.5 | Minus |
| 2L | 23513712 | 2L | 8775681..8776055 | 462..88 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 8780484..8780846 | 462..100 | 915 | 83.5 | Minus |
| 2L | 23513712 | 2L | 8768175..8768521 | 445..99 | 565 | 77.5 | Minus |
| 2L | 23513712 | 2L | 8779984..8780393 | 901..492 | 550 | 75.6 | Minus |
| 2L | 23513712 | 2L | 8771467..8771769 | 763..461 | 495 | 77.6 | Minus |
| 2L | 23513712 | 2L | 8776116..8776196 | 89..9 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 8771825..8772176 | 462..111 | 380 | 73.9 | Minus |
| 2L | 23513712 | 2L | 8774939..8775089 | 1084..935 | 355 | 88.2 | Minus |
| 2L | 23513712 | 2L | 8767750..8768089 | 808..469 | 305 | 72.6 | Minus |
| 2L | 23513712 | 2L | 10458451..10458681 | 93..323 | 270 | 74.5 | Plus |
| 2L | 23513712 | 2L | 10455694..10455826 | 242..110 | 230 | 78.2 | Minus |
| 2L | 23513712 | 2L | 10458888..10459002 | 469..583 | 215 | 79.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:47:06 has no hits.
UFO03585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:17 Download gff for
UFO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-RA | 62..1150 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:43 Download gff for
UFO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-RA | 64..1152 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:48 Download gff for
UFO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-RA | 64..1152 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:48 Download gff for
UFO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8775153..8775623 | 461..934 | 97 | <- | Minus |
| 2L | 8775683..8776053 | 90..460 | 100 | <- | Minus |
| 2L | 8776116..8776200 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:43 Download gff for
UFO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8775153..8775623 | 461..934 | 97 | <- | Minus |
| arm_2L | 8775683..8776053 | 90..460 | 100 | <- | Minus |
| arm_2L | 8776116..8776200 | 1..89 | 95 | | Minus |
