UFO03588.5prime Sequence
1089 bp (852 high quality bases) assembled on 2009-02-03
> UFO03588.5prime
CAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGAGTTTTCCA
CTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGTTGCCGAGG
AGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCCGGATCTCG
AGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGAATGAGGAT
CTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAACTCCTTCGA
AACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGTGGCAGTTT
TCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCATCTGCGAC
GCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGGGCCCAGCT
GCCGACCATCAATCTGCACCCACATCCAGTCACGCTGGGCGTGGCCCTGC
GGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTATCTACGAG
TCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATGTACGGCAC
CGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCTGAACGGCA
ACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATTTCTCGTTT
TGTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTCAAGCAAGCCC
AGCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATATCGGCAACCTGG
ACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCTGGAACCAACAT
CACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAGGTGCAAGGAGTGG
CTAAGGCACTCTACGAGAGCGAGGAACCTCTTCCAAACGTGTCCTGCCCC
CTGACCAACAGCATGGGCCCTGGTCTACGATGTCGTCCAGCTTCTGGCCG
AGACCACAAGCATGTGACCTCCGGCCCGTTGCCCTCAGTTGTACGATGAC
AGTGCTGGGACAAGGCCTACACGCTCGTCACTACCTGAGTCGCTTCGCCT
GATTGCTCCAGGGACCCATCCGTTTGACCACAGGACTTC
UFO03588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5621-RD | 3008 | CG5621-RD | 161..1200 | 9..1044 | 4785 | 98.1 | Plus |
| CG5621-RC | 3011 | CG5621-RC | 161..1200 | 9..1044 | 4785 | 98.1 | Plus |
| CG5621-RA | 3640 | CG5621-RA | 161..1200 | 9..1044 | 4785 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20902687..20903283 | 281..878 | 2785 | 98.8 | Plus |
| 3R | 32079331 | 3R | 20902424..20902588 | 117..281 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 20902116..20902226 | 9..119 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 20903476..20903620 | 889..1030 | 420 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:41 has no hits.
UFO03588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:17 Download gff for
UFO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 118..1167 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:04 Download gff for
UFO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..1205 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:58 Download gff for
UFO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..1205 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:58 Download gff for
UFO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20902111..20902224 | 1..117 | 96 | -> | Plus |
| 3R | 20902425..20902588 | 118..281 | 100 | -> | Plus |
| 3R | 20902688..20903294 | 282..889 | 98 | -> | Plus |
| 3R | 20903477..20903634 | 890..1042 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:04 Download gff for
UFO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16727833..16727946 | 1..117 | 96 | -> | Plus |
| arm_3R | 16728147..16728310 | 118..281 | 100 | -> | Plus |
| arm_3R | 16728410..16729016 | 282..889 | 98 | -> | Plus |
| arm_3R | 16729199..16729356 | 890..1042 | 92 | | Plus |
