UFO03589.5prime Sequence
1076 bp (981 high quality bases) assembled on 2009-02-03
> UFO03589.5prime
CAGTCGACATGAAACTCGTGCTCCTTTTGAGCGCCCTGCTGGCGGGGATT
GCCCTTTCCCAGGGAGCCGCCGTGATGTCCGTGGATCTGGGCAGCGAGTG
GATGAAAGTGGGCGTTGTGTCGCCTGGAGTGCCTATGGAAATCGCCCTGA
ATCGCGAGTCCAAGCGCAAGACGCCCGCGATCCTAGCCTTCCGCGATGGA
ACGCGAACCATTGGCGAGGATGCACAAACAATTGGTATCAAGGATCCCAA
CTCGGCCTATGGCTATCTTCTGGATTTGCTGGGCAAGACCATCGATAATC
CCATTGTGGATTTGTATAGGAAACGCTTCCCATACTACAACATTGTGGGT
GATCCGGAGCGCAACACCGTGGTCTTCCGCAAAAGCGACACCGATGAATT
CTCCGTGGAGGAACTGGTTGCTCAATTGCTGGTCAAGGCCAAGCAGTTCG
CCCAGGAATCCGTACAGCAGCCAATAACCGAGTGCGTCCTAACCGTGCCC
GGTTACTTTGGCCAAGCCGAAAGGGAAGCTCTCTTGTCCGCCGCCCAGTT
GGCCAATCTTAAGGTACTCCAGCTAATCAACGACTATGCGGCGGTGGCTC
TAAACTACGGCGTCTTCCATCGCGGCGAAATCAACGAAACGGCCCAGTAT
TTCCTCTTCTACGATATGGGCGCCTACAAAACCTCAGCCGCTGTGGTCAG
CTATCAGTTGGTGAAGGATAAACAAACCAGGGAGATCAACCCGGTGGTGC
AGTCCTTGGCGTTGGTTATGATCGCACTCTGGGAGGCCTGAGATTCAACT
AAGATTGCGTGATTATCTGGCGCAGAGTTTAATGCCCTAAGAGACTAAAC
CGATGTGACCACCAGTCCCGAGCACTGCCAAACTTTCAAGGAGCAGACGA
CTAAGATGTCTGTCCGCCAATACGGAGTTCTTCCCCTCAATCGAAACTGA
TAGAGCACTTGACTTTAAATTGCCCGTCACTCGTGAGAAGCTGAGCACTC
TGCAGATCTTTGCCAGCCAAACATGAGAGCATGCTTCGTTGCACCTCAGC
TGACTATCACAGTGATTTGTCGGAGC
UFO03589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2918-RB | 3387 | CG2918-RB | 132..1157 | 8..1012 | 4540 | 97.6 | Plus |
| CG2918-RA | 3175 | CG2918-RA | 197..1222 | 8..1012 | 4540 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2273261..2273954 | 993..317 | 2620 | 96.5 | Minus |
| X | 23542271 | X | 2274025..2274337 | 320..8 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:26 has no hits.
UFO03589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:16 Download gff for
UFO03589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 202..1232 | 1..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:55 Download gff for
UFO03589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 192..1222 | 1..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:12 Download gff for
UFO03589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 192..1222 | 1..1012 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:12 Download gff for
UFO03589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2273261..2273951 | 320..993 | 96 | <- | Minus |
| X | 2274026..2274342 | 1..319 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:55 Download gff for
UFO03589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2167294..2167984 | 320..993 | 96 | <- | Minus |
| arm_X | 2168059..2168375 | 1..319 | 99 | | Minus |
