UFO03590.5prime Sequence
1144 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03590.5prime
CAGTCGACATGGGACCCAAAAAGAAGTCCGTTGCTGTAGCTATTGCAGAA
ACTAAACCAGAAGACCAACCACCACCTGAAAAGGTGAAGCCAAAGAAAGA
GCCCATCCCCGTTTTCGTATTCGATGTTATAGTCACCCATTTGGAGGCCA
AAAATACCGAGTTCACCAATCCATCGAAGCTAGAAGTCACAGCAAACTTC
TTCAAAACTCCACTTCTCCTCACCAATAGTCAGATAAATGTTAGCGATTT
CAAGGCGAATGCCGGTCTCTCCCTTCAAAAGGATCCAAAGGAAATTCGTA
AGACAGTTAACGATTGTGGGATATCCTTCAGCGTGGTGTACAGCAAGAAG
GTGATTGGCTCCGGGCAGGCATCGTTCCCCTCCAGCGTAGTGGACTCCAT
AGAAAAGGACATGACCGATATTCTTCACTCGGACGTCATTGATTTGGCTG
CAGGCGGCGAGGTGACCGGCAAACTGGAGTTCCTTTGCCGGTTGGTCGTC
ATGTGCATTGCTGATGAGCCTGAGCTCGAGTGCGCCCGTAACATGGACAG
GAGCATCAATGCACAGGATATTATGTTCGTAATGGGTGAATCGCAGGTGT
GTCCCAGTGCCTGTGAACCCTGTCAAAATGATTTGGAAGCGGAGGAAGGC
GACGAGCGGCTCAGACTGGACCTGGAACGATATCGCAGCCAGGGTGGTGG
TATAAAGCCATACAATATGATGACGAACAACGCATCTGGGATACCAGCGT
GTTGTGAACTTAAGAAAATGGCAATCGAGTACGAGCGGATGATTGATTCC
ATCACCAAACAGACCGGCATGCCGCCTCCCAAGCCTCCGTGTCGTAGTCC
CGACGAGGCGAACAACTTTGGCATGAACCCCTGTTGGTGCCAACCTGAAC
TTCCTCAATTTCTTGAGCTGCCCGAGAAACCGGACAAGCCATGCTTCGTT
TACCTGCCCCGCCACCCAAGATCACGAGCCGGACTTCTGCGAGAAAGACC
TAATGCGGTTCCATTGGCGGACTGCCATGGAAAGAAGCCGAAATCAGCCC
ATCCGCTTTTGTCCGGGTCTGCCTGACCAATATGTCCTGGCTGCCGAAGT
TGCAGCGGTCGGAGTGTGGATCTAACGAGTGCCGTGTGGAGATG
UFO03590.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3292 | CG14355-RA | 137..1257 | 4..1120 | 5265 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14151294..14151804 | 514..4 | 2540 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14150565..14150904 | 1101..763 | 1340 | 96.2 | Minus |
| 3R | 32079331 | 3R | 14150963..14151212 | 764..515 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:11 has no hits.
UFO03590.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:15 Download gff for
UFO03590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 194..1316 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:44 Download gff for
UFO03590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 135..1257 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:29 Download gff for
UFO03590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 135..1257 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:29 Download gff for
UFO03590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14150543..14150902 | 765..1120 | 95 | <- | Minus |
| 3R | 14150963..14151212 | 515..764 | 100 | <- | Minus |
| 3R | 14151294..14151805 | 1..514 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:44 Download gff for
UFO03590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9976265..9976624 | 765..1120 | 95 | <- | Minus |
| arm_3R | 9976685..9976934 | 515..764 | 100 | <- | Minus |
| arm_3R | 9977016..9977527 | 1..514 | 99 | | Minus |
